Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1805 |
Symbol | |
ID | 4252379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 2140302 |
End bp | 2142281 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638118416 |
Product | helicase c2 |
Protein accession | YP_733936 |
Protein GI | 113970143 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1199] Rad3-related DNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCAAG CCAAACTTCA GCAATCCAAT CAGCAGTCGA GCGACGCTCA ACGTCCAATG AGCCGATTGG CGAGTGAAGT GCTGCGCGCT TTTGCCAGCG ATGGGGTGCT TGCCAAGCAT ATTCAAGGGT TTAGTGCGCG TCAGAGTCAG GTTGAAATGG CGCAAGTCAT CAGTGAAGCG ATTGCGAGTA AGGGCAATGC ACTGATTGAA GCGGGAACTG GGGTCGGTAA AACCTTCGCG TATCTAATTC CGGCGATCTT AAGTGGCAAG CAAGTAATCG TGAGCACGGG CAGTAAAAAC TTGCAGGAGC AATTGTTTCT AAAGGATTTA CCCGCATTGA CATCTATGCT TGGGATTGCG CCCAAGCTTG CCTTATTAAA AGGCCGCAAT AACTATTTAT GCCAGCATCG ACTCGATAGG CAGATGCAGG AGGCCAGCCA TATTGAGGCG CGCTTATTGG ATGATTTACT CAAAATCAAT CAATGGGCGG GTATGAGTAA AGATGGCGAT ATCGGTGGCT TAACCTCTGT TGCCGAAAAC TCTCCCGCGC TTCCCTTAGT GGTCAGTACC AAAGAGACCT GTCTTGGGCA GCGCTGCGAA TTTTATGATG CCTGTTTTAC CCGTAAGGCC CGCAGCCGCG CCATGGACGC AAAAATCATC GTGGTGAATC ATCACTTATT CTTTGCCGAT AGCGTGTTAA AGGATACGGG CTTTGCCGAG CTGTTGCCCG ATCCCGATGT CGTGATCTTC GATGAGGCGC ATTTGTTGCC AGACATCTGC GTCAGTTACT TTGGGCAGCA ATCGTCGAGT CGCACCATCG ATGATTATCT GCAAAAGTTA TTGCAGATTT ATCAAACTGA GCTCAGCGAT ACGGGGCAGA TTGCTCAATT CTGTCAGCGC TGTTTAACCA AGTTAAGTGA TTGGCATAAT GCGTTATTTT CGAGTGGTGA GTCGGACTGG CGGATGCAAC TTGGTAATAA ATCCATCGCC TTAGCCTCTT GGGATTTATT GGCTGAATTA ACCGCACTGC AAAAGCTGCT ACTTGTGCAC GTGGGACGCA GTGAATTATT GGATGATATT GCAGTAAAGC TGACTGAGCT TAATCATAAA CTGAATCAAT TTTTTAATTG TGATAACCCG CAGGCGGCGT ACAGCGTTGA GTTTGGTAGT CGATTTGTCA TGCTGCGAAT GTCACCCATC AATATTGCCC GCGAGTGCCA GCAGTTATTT GTGGCCAGTA CTAGCTGGAT TTTTACCTCG GCGACCTTGC AAGTGAACCG CAGCCTAGGG CATTTTGCAC AGGAGCTTGG GATAAGCGAT GCCAAGGCAC ATATCTTAGA CAGTCCCTTC GATTATCCGC GTCAGGCGTT ATTTTGTGTG CCGAGGCAAC TGGGGAATGT GGCGAATCAG CAGCAAGCGC TTAAGCAGTT AGTCGATGTG TGTGTCAAAG CGATTGAGGC GGCGCAGGGG CGAACCTTTA TTCTGTTTAC CAGCCATAAA ATGCTCGAGC AAACCGCGCT GGCATTGCGC ACACGAACTC AATATCCGCT ATTGGTGCAA GGGCAGGCGG GCAAGCAGAG TCTGCTGACC AAGTTTCGCC AACTAGGGAA TGCGGTGTTA CTGGGCACGA GCAGTTTTTG GGAAGGGGTG GACGTGCGCG GCAAGTTATT AAGCTGCGTA ATTATCGATA AGCTGCCCTT TGTGTCACCC GATGAACCGC TTTACCGTGC CCGCGCCGAC AATATCAGCC GTCAGGGCGG CGATCCTTTT ACTCAAGTAT CATTACCTCA GGCGATTATT GCACTCAAGC AAGGGGTTGG ACGTTTGATC CGTGACGAAA AGGACTGCGG CGTACTCATT CTTTGTGATA ATCGAATTGT GAATCGCGCC TACGGACAGG CCTTTTTAAA CTCCCTGCCG CCGATGTCGC GCACCCGAGA TTTAGACCAA GTCCTGCAAT TTTTAAGGAA AATCCCTTAA
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Protein sequence | MRQAKLQQSN QQSSDAQRPM SRLASEVLRA FASDGVLAKH IQGFSARQSQ VEMAQVISEA IASKGNALIE AGTGVGKTFA YLIPAILSGK QVIVSTGSKN LQEQLFLKDL PALTSMLGIA PKLALLKGRN NYLCQHRLDR QMQEASHIEA RLLDDLLKIN QWAGMSKDGD IGGLTSVAEN SPALPLVVST KETCLGQRCE FYDACFTRKA RSRAMDAKII VVNHHLFFAD SVLKDTGFAE LLPDPDVVIF DEAHLLPDIC VSYFGQQSSS RTIDDYLQKL LQIYQTELSD TGQIAQFCQR CLTKLSDWHN ALFSSGESDW RMQLGNKSIA LASWDLLAEL TALQKLLLVH VGRSELLDDI AVKLTELNHK LNQFFNCDNP QAAYSVEFGS RFVMLRMSPI NIARECQQLF VASTSWIFTS ATLQVNRSLG HFAQELGISD AKAHILDSPF DYPRQALFCV PRQLGNVANQ QQALKQLVDV CVKAIEAAQG RTFILFTSHK MLEQTALALR TRTQYPLLVQ GQAGKQSLLT KFRQLGNAVL LGTSSFWEGV DVRGKLLSCV IIDKLPFVSP DEPLYRARAD NISRQGGDPF TQVSLPQAII ALKQGVGRLI RDEKDCGVLI LCDNRIVNRA YGQAFLNSLP PMSRTRDLDQ VLQFLRKIP
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