Gene Shewmr4_1805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1805 
Symbol 
ID4252379 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2140302 
End bp2142281 
Gene Length1980 bp 
Protein Length659 aa 
Translation table11 
GC content50% 
IMG OID638118416 
Producthelicase c2 
Protein accessionYP_733936 
Protein GI113970143 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1199] Rad3-related DNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCAAG CCAAACTTCA GCAATCCAAT CAGCAGTCGA GCGACGCTCA ACGTCCAATG 
AGCCGATTGG CGAGTGAAGT GCTGCGCGCT TTTGCCAGCG ATGGGGTGCT TGCCAAGCAT
ATTCAAGGGT TTAGTGCGCG TCAGAGTCAG GTTGAAATGG CGCAAGTCAT CAGTGAAGCG
ATTGCGAGTA AGGGCAATGC ACTGATTGAA GCGGGAACTG GGGTCGGTAA AACCTTCGCG
TATCTAATTC CGGCGATCTT AAGTGGCAAG CAAGTAATCG TGAGCACGGG CAGTAAAAAC
TTGCAGGAGC AATTGTTTCT AAAGGATTTA CCCGCATTGA CATCTATGCT TGGGATTGCG
CCCAAGCTTG CCTTATTAAA AGGCCGCAAT AACTATTTAT GCCAGCATCG ACTCGATAGG
CAGATGCAGG AGGCCAGCCA TATTGAGGCG CGCTTATTGG ATGATTTACT CAAAATCAAT
CAATGGGCGG GTATGAGTAA AGATGGCGAT ATCGGTGGCT TAACCTCTGT TGCCGAAAAC
TCTCCCGCGC TTCCCTTAGT GGTCAGTACC AAAGAGACCT GTCTTGGGCA GCGCTGCGAA
TTTTATGATG CCTGTTTTAC CCGTAAGGCC CGCAGCCGCG CCATGGACGC AAAAATCATC
GTGGTGAATC ATCACTTATT CTTTGCCGAT AGCGTGTTAA AGGATACGGG CTTTGCCGAG
CTGTTGCCCG ATCCCGATGT CGTGATCTTC GATGAGGCGC ATTTGTTGCC AGACATCTGC
GTCAGTTACT TTGGGCAGCA ATCGTCGAGT CGCACCATCG ATGATTATCT GCAAAAGTTA
TTGCAGATTT ATCAAACTGA GCTCAGCGAT ACGGGGCAGA TTGCTCAATT CTGTCAGCGC
TGTTTAACCA AGTTAAGTGA TTGGCATAAT GCGTTATTTT CGAGTGGTGA GTCGGACTGG
CGGATGCAAC TTGGTAATAA ATCCATCGCC TTAGCCTCTT GGGATTTATT GGCTGAATTA
ACCGCACTGC AAAAGCTGCT ACTTGTGCAC GTGGGACGCA GTGAATTATT GGATGATATT
GCAGTAAAGC TGACTGAGCT TAATCATAAA CTGAATCAAT TTTTTAATTG TGATAACCCG
CAGGCGGCGT ACAGCGTTGA GTTTGGTAGT CGATTTGTCA TGCTGCGAAT GTCACCCATC
AATATTGCCC GCGAGTGCCA GCAGTTATTT GTGGCCAGTA CTAGCTGGAT TTTTACCTCG
GCGACCTTGC AAGTGAACCG CAGCCTAGGG CATTTTGCAC AGGAGCTTGG GATAAGCGAT
GCCAAGGCAC ATATCTTAGA CAGTCCCTTC GATTATCCGC GTCAGGCGTT ATTTTGTGTG
CCGAGGCAAC TGGGGAATGT GGCGAATCAG CAGCAAGCGC TTAAGCAGTT AGTCGATGTG
TGTGTCAAAG CGATTGAGGC GGCGCAGGGG CGAACCTTTA TTCTGTTTAC CAGCCATAAA
ATGCTCGAGC AAACCGCGCT GGCATTGCGC ACACGAACTC AATATCCGCT ATTGGTGCAA
GGGCAGGCGG GCAAGCAGAG TCTGCTGACC AAGTTTCGCC AACTAGGGAA TGCGGTGTTA
CTGGGCACGA GCAGTTTTTG GGAAGGGGTG GACGTGCGCG GCAAGTTATT AAGCTGCGTA
ATTATCGATA AGCTGCCCTT TGTGTCACCC GATGAACCGC TTTACCGTGC CCGCGCCGAC
AATATCAGCC GTCAGGGCGG CGATCCTTTT ACTCAAGTAT CATTACCTCA GGCGATTATT
GCACTCAAGC AAGGGGTTGG ACGTTTGATC CGTGACGAAA AGGACTGCGG CGTACTCATT
CTTTGTGATA ATCGAATTGT GAATCGCGCC TACGGACAGG CCTTTTTAAA CTCCCTGCCG
CCGATGTCGC GCACCCGAGA TTTAGACCAA GTCCTGCAAT TTTTAAGGAA AATCCCTTAA
 
Protein sequence
MRQAKLQQSN QQSSDAQRPM SRLASEVLRA FASDGVLAKH IQGFSARQSQ VEMAQVISEA 
IASKGNALIE AGTGVGKTFA YLIPAILSGK QVIVSTGSKN LQEQLFLKDL PALTSMLGIA
PKLALLKGRN NYLCQHRLDR QMQEASHIEA RLLDDLLKIN QWAGMSKDGD IGGLTSVAEN
SPALPLVVST KETCLGQRCE FYDACFTRKA RSRAMDAKII VVNHHLFFAD SVLKDTGFAE
LLPDPDVVIF DEAHLLPDIC VSYFGQQSSS RTIDDYLQKL LQIYQTELSD TGQIAQFCQR
CLTKLSDWHN ALFSSGESDW RMQLGNKSIA LASWDLLAEL TALQKLLLVH VGRSELLDDI
AVKLTELNHK LNQFFNCDNP QAAYSVEFGS RFVMLRMSPI NIARECQQLF VASTSWIFTS
ATLQVNRSLG HFAQELGISD AKAHILDSPF DYPRQALFCV PRQLGNVANQ QQALKQLVDV
CVKAIEAAQG RTFILFTSHK MLEQTALALR TRTQYPLLVQ GQAGKQSLLT KFRQLGNAVL
LGTSSFWEGV DVRGKLLSCV IIDKLPFVSP DEPLYRARAD NISRQGGDPF TQVSLPQAII
ALKQGVGRLI RDEKDCGVLI LCDNRIVNRA YGQAFLNSLP PMSRTRDLDQ VLQFLRKIP