| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1672 |
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| Symbol | |
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| ID | 4252248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1973053 |
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| End bp | 1973697 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638118284 |
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| Product | putative solute/DNA competence effector |
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| Protein accession | YP_733805 |
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| Protein GI | 113970012 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000366609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGAAT CAACAGATAA GTTGACCGAC ACCAACGCAA TTTTGGCGTA TTTGTATGAA
ACATTTCCTT TGTGCTTTAT TGCTGAAGGT GAAACTAAGC CATTAAAAAT CGGATTGTTT
CAAGATTTGG CTGAAAGGTT GGCTGATGAT TCTAAAGTCA GTAAAACTCA ACTGCGAGTT
GCCTTAAGAC GCTACACCAG CAGCTGGCGC TACCTGAAAT CGGTAAAAGC CGGTGCACAG
CGTGTGGATC TTGATGGTCA GCCATGCGGT GAGTTAGAGC AAGAGCATAT CGATCATGCT
CAAGCTATGT TGAAAGAAAG CCAAGATAAA GCAAAAGCTA AGCGTGCAGC TCAAGCGCCA
AAAGCGGCGC CTGCGGGTAA AGCCCCTGCA AAGAAAGCCC CTAAGAAAGT TGCCGTGCCA
GCACGTAAGA CTGAGCGCCC AGCAAAAGCA GCACCTAAGG CAGAGCCTGC TGTTAACTTA
GTTCAAGCGC AATTGACCGA TTTAGCGAAG AAGCAACGTG TCAATGTTAA GTTAGGGATG
ACGCCAGTAG CCGGCGTGAT CACCGACATT AACAAAGAGG ACATTCATGT TCAGCTAGAT
AGCGGCTTAA CGGTAAAAGT GAAAGCGGAA CATATCCTGC TGTAA
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| Protein sequence | MMESTDKLTD TNAILAYLYE TFPLCFIAEG ETKPLKIGLF QDLAERLADD SKVSKTQLRV
ALRRYTSSWR YLKSVKAGAQ RVDLDGQPCG ELEQEHIDHA QAMLKESQDK AKAKRAAQAP
KAAPAGKAPA KKAPKKVAVP ARKTERPAKA APKAEPAVNL VQAQLTDLAK KQRVNVKLGM
TPVAGVITDI NKEDIHVQLD SGLTVKVKAE HILL
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