Gene Shewmr4_1660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1660 
Symbol 
ID4252236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1960540 
End bp1961550 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content49% 
IMG OID638118272 
Productaminodeoxychorismate lyase 
Protein accessionYP_733793 
Protein GI113970000 
COG category[R] General function prediction only 
COG ID[COG1559] Predicted periplasmic solute-binding protein 
TIGRFAM ID[TIGR00247] conserved hypothetical protein, YceG family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.132451 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAA TCATTCTGAT CGCAAGTTCT ACTTTGTTGA CCTTGCTGAC CTTAGCTTGT 
TTGGTTGGTT ATTGGGGCTA TCGAACGATA ATTGATTACA GCCAAACCCC CTTAGTCCTA
ACCGAAGCCA AAGAATTAAC CATTGCCCGT GGCACCAGCG TGCACCAGTT GGCCCAACAG
TTAGAAACCG ATGGTGTTAT CCAAGACAAA TGGAAACTCA AATGGTTACT AAGATTGCGC
CCAGAGCTGG CGAAGATCCG TACCGGTCTT TACGAGATGT CTCCTTCGCA GTCGATTGCC
GACTTACTCA ACGATTTAGT TAATGGCAAG GTGAAAACCT TTAGCCTGAC TTTAGTCGAA
GGCAAAACCA TTGCCGAGTG GGAACAACAG CTTGCGAGTG CGCCGCACTT ACAGTTGTCC
CCCGAGGTCT TTAGTGCGGT ATTGATGGAG CAGGGCGATG ATTCGGCGTT GCCTGAGGGT
AAGTTCTTCC CCGATACTTA TCATTACACC GCCGATAGTG ATGCTAAGAC GCTGCTCACC
CAAAGTTATA AGATGATGGA GCAGGAGCTT GCCAAAGCAT GGGCGGAGCG TGTGCCCGGT
TTACCACTCA AATCGCCCTA CCAGATGCTG ATCTTGGCCT CGATTGTGGA GAAAGAAACA
GGCCAAGCCT TCGAGCGCGA TCAAATCGCC GGTGTCTTTA TCAATCGACT CAATCTGGGG
ATGAAGCTGC AAACCGATCC AACGGTCATT TATGGCATGG GTGACAGATT TAAAGGCAAT
ATCACCCGTA AAGATCTCGT CGAAGAGACA CCCTTTAACA CTTACCGGAT TTTCGGCTTA
CCGCCAACGC CGATTGCTGC GCCGAGTAAG GCCTCATTGC AGGCGGTGTC TAAACCTGCC
AAGGTCAGTT ATTTGTATTT TGTGTCGCGC AACGATGGCA CCCATGTGTT TTCCACCACC
TTGGAAGAGC ATAACCGCGC CGTCGATATT TATCAGAGAA AGAAAAAATG A
 
Protein sequence
MKKIILIASS TLLTLLTLAC LVGYWGYRTI IDYSQTPLVL TEAKELTIAR GTSVHQLAQQ 
LETDGVIQDK WKLKWLLRLR PELAKIRTGL YEMSPSQSIA DLLNDLVNGK VKTFSLTLVE
GKTIAEWEQQ LASAPHLQLS PEVFSAVLME QGDDSALPEG KFFPDTYHYT ADSDAKTLLT
QSYKMMEQEL AKAWAERVPG LPLKSPYQML ILASIVEKET GQAFERDQIA GVFINRLNLG
MKLQTDPTVI YGMGDRFKGN ITRKDLVEET PFNTYRIFGL PPTPIAAPSK ASLQAVSKPA
KVSYLYFVSR NDGTHVFSTT LEEHNRAVDI YQRKKK