Gene Shewmr4_1603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1603 
SymbolmnmA 
ID4252180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand- 
Start bp1898292 
End bp1899410 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content49% 
IMG OID638118216 
ProducttRNA-specific 2-thiouridylase MnmA 
Protein accessionYP_733737 
Protein GI113969944 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.000041777 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATCAA TCGAACCCAC TCATACAGGA AAAAAAGTCA TTGTCGGCAT GTCCGGCGGT 
GTTGATTCAT CTGTTTCAGC CTATTTGCTA ATGCAGCAAG GCTATCAGGT TGAAGGCCTT 
TTCATGAAGA ACTGGGAAGA AGATGACAAC GACGAGTATT GCGCGGCCGC CGAAGATTTA 
AAAGATGCTC AAGCCGTTTG TGACAAACTT GGGATCAAAC TGCACACGGT CAACTTTGCC 
GCCGAATATT GGGACAATGT GTTCGAGTAC TTCCTCGCCG AATATAAGGC GGGTCGTACC 
CCTAACCCCG ATATCATGTG CAACAAAGAA ATCAAATTTA AAGCCTTTTT AGACTTTGCC 
GACGATATCC TCGATGCCGA CTATATCGCC ATGGGCCACT ATGTGCGCCG CCGCGATAAT 
GCCGATGGCA CCACGCAAAT GCTGCGCGGA GTTGATAACA ATAAGGATCA AAGCTACTTC 
CTGTATACCT TAAGCCATGA ACAAGTGGCG CGCAGCCTGT TCCCCGTTGG TGAACTCGAA 
AAGCACGAAG TGCGTGAAAT CGCTAAAAAA ATGGGCTTAA TTACCCATGA TAAAAAGGAC 
AGCACCGGCA TTTGCTTTAT CGGTGAACGC AAATTCACTG AATTCTTAGG CAATTACTTA 
CCTGCGCAAC CAGGCAATAT CGAAACCGCC GAAGGCGAAG TCATTGGCAA GCACCAAGGC 
TTGATGTACC ACACCTTAGG CCAACGTAAG GGTCTGGGTA TTGGCGGCAT GAAAAACAGC 
AATGACGACC CTTGGTACGT GGTCGATAAA GATCTCAAAC GTAATGTGCT TGTTGTTGGC 
CAAGGTGGGC ATCACCCGCG TTTGATGTCC AACGGCATGC TCGTCAATCA ATTGCATTGG 
GTCGACCGCA AAGGCCCCGC CGAAGGCAGC CAAATTGTGG TGAAAACCCG TTACCGCCAG 
CAGGATATCC CCTGCACCCT CACCTATCTT GATGATAATA CCCTCAAGGT GGTGTTTGAT 
GAGCCTGTTG CCGCCGTGAC CCCTGGCCAA TCAGCGGTAT TCTACGATGG CGAAGTGTGC 
CTAGGTGGCG GGATTATCGA TCAACTGATC CGAGGATAA
 
Protein sequence
MTSIEPTHTG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL FMKNWEEDDN DEYCAAAEDL 
KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLDFA 
DDILDADYIA MGHYVRRRDN ADGTTQMLRG VDNNKDQSYF LYTLSHEQVA RSLFPVGELE 
KHEVREIAKK MGLITHDKKD STGICFIGER KFTEFLGNYL PAQPGNIETA EGEVIGKHQG 
LMYHTLGQRK GLGIGGMKNS NDDPWYVVDK DLKRNVLVVG QGGHHPRLMS NGMLVNQLHW 
VDRKGPAEGS QIVVKTRYRQ QDIPCTLTYL DDNTLKVVFD EPVAAVTPGQ SAVFYDGEVC 
LGGGIIDQLI RG