Gene Shewmr4_1603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1603 
SymbolmnmA 
ID4252180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1898292 
End bp1899410 
Gene Length1119 bp 
Protein Length372 aa 
Translation table11 
GC content49% 
IMG OID638118216 
ProducttRNA-specific 2-thiouridylase MnmA 
Protein accessionYP_733737 
Protein GI113969944 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.1777e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACATCAA TCGAACCCAC TCATACAGGA AAAAAAGTCA TTGTCGGCAT GTCCGGCGGT 
GTTGATTCAT CTGTTTCAGC CTATTTGCTA ATGCAGCAAG GCTATCAGGT TGAAGGCCTT
TTCATGAAGA ACTGGGAAGA AGATGACAAC GACGAGTATT GCGCGGCCGC CGAAGATTTA
AAAGATGCTC AAGCCGTTTG TGACAAACTT GGGATCAAAC TGCACACGGT CAACTTTGCC
GCCGAATATT GGGACAATGT GTTCGAGTAC TTCCTCGCCG AATATAAGGC GGGTCGTACC
CCTAACCCCG ATATCATGTG CAACAAAGAA ATCAAATTTA AAGCCTTTTT AGACTTTGCC
GACGATATCC TCGATGCCGA CTATATCGCC ATGGGCCACT ATGTGCGCCG CCGCGATAAT
GCCGATGGCA CCACGCAAAT GCTGCGCGGA GTTGATAACA ATAAGGATCA AAGCTACTTC
CTGTATACCT TAAGCCATGA ACAAGTGGCG CGCAGCCTGT TCCCCGTTGG TGAACTCGAA
AAGCACGAAG TGCGTGAAAT CGCTAAAAAA ATGGGCTTAA TTACCCATGA TAAAAAGGAC
AGCACCGGCA TTTGCTTTAT CGGTGAACGC AAATTCACTG AATTCTTAGG CAATTACTTA
CCTGCGCAAC CAGGCAATAT CGAAACCGCC GAAGGCGAAG TCATTGGCAA GCACCAAGGC
TTGATGTACC ACACCTTAGG CCAACGTAAG GGTCTGGGTA TTGGCGGCAT GAAAAACAGC
AATGACGACC CTTGGTACGT GGTCGATAAA GATCTCAAAC GTAATGTGCT TGTTGTTGGC
CAAGGTGGGC ATCACCCGCG TTTGATGTCC AACGGCATGC TCGTCAATCA ATTGCATTGG
GTCGACCGCA AAGGCCCCGC CGAAGGCAGC CAAATTGTGG TGAAAACCCG TTACCGCCAG
CAGGATATCC CCTGCACCCT CACCTATCTT GATGATAATA CCCTCAAGGT GGTGTTTGAT
GAGCCTGTTG CCGCCGTGAC CCCTGGCCAA TCAGCGGTAT TCTACGATGG CGAAGTGTGC
CTAGGTGGCG GGATTATCGA TCAACTGATC CGAGGATAA
 
Protein sequence
MTSIEPTHTG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL FMKNWEEDDN DEYCAAAEDL 
KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLDFA
DDILDADYIA MGHYVRRRDN ADGTTQMLRG VDNNKDQSYF LYTLSHEQVA RSLFPVGELE
KHEVREIAKK MGLITHDKKD STGICFIGER KFTEFLGNYL PAQPGNIETA EGEVIGKHQG
LMYHTLGQRK GLGIGGMKNS NDDPWYVVDK DLKRNVLVVG QGGHHPRLMS NGMLVNQLHW
VDRKGPAEGS QIVVKTRYRQ QDIPCTLTYL DDNTLKVVFD EPVAAVTPGQ SAVFYDGEVC
LGGGIIDQLI RG