Gene Shewmr4_1592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1592 
Symbol 
ID4252169 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1881795 
End bp1884164 
Gene Length2370 bp 
Protein Length789 aa 
Translation table11 
GC content48% 
IMG OID638118205 
Productphosphoenolpyruvate synthase 
Protein accessionYP_733726 
Protein GI113969933 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 
TIGRFAM ID[TIGR01418] phosphoenolpyruvate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.71516e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.38574 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGCAAT ACGTACTCTG GTATCAGGAA TTAGGCATGG GTGACGTCAA CTTGGTTGGC 
GGTAAAAATG CTTCTCTTGG CGAGATGATC AGCAATCTAG CTAATGCCGG TGTTCAAGTA
CCTGGCGGAT TTGCGACTAC TTCTTATGCG TTCAATGAGT TCCTTGAACA AAGTGGAGTA
AACCAGAAGA TTTATGACAT CCTAGCAACA TTGGATGTAG ATGATGTCAA TGCACTGGCA
CAAGTAGGTG CACAGATCAG ACAATGGGTT ATCGACACCC CGTTCCAACC AGCACTCGAG
CAAGCGATTC GTGAAGCTTA CGACAAACTT GCGGCTGAAA CGAGCGATGC ATCATTCGCG
GTTCGTTCTT CTGCCACCGC AGAAGATATG CCAGATGCTT CTTTTGCTGG TCAGCAAGAA
ACCTTCTTAA ACGTGAAAGG ATTTGACTCA GTACTCGTAG CCATTAAGCA CGTGTTTGCG
TCACTCTTTA ACGACCGTGC AATTTCATAC CGTGTTCACC AAGGTTATGA GCACCACGGT
GTTGCCCTGT CTGCCGGCGT ACAACGCATG GTTCGTTCAG ACAAAGCGGC ATCAGGTGTG
ATGTTCACCA TGGACACTGA ATCAGGCAAC AACGATGTGG TGTTTATCAC TTCATCTTTC
GGTCTGGGTG AAATGGTTGT TCAAGGTGCG GTAAACCCTG ACGAATTCTA TGTTCACAAA
CCCATCCTCA CTCAAGGCCA TAAAGCCGTT GTTCGCCGTA ATATCGGTAG CAAGCTCATC
CAGATGGTGT ATTCCGATGA TGCTTCTCAC GGCAAACAAG TGAAAATTGA AGACGTTGCT
GCTGAAAAAC GTCGTCAATT CTCTATCAAC GACGCCGAAG TGATGGAATT GGCTAAACAA
GCTATGGTTA TCGAAAAACA CTACGGTCGT CCAATGGACA TCGAGTGGGC AAAAGACGGT
AACGATGGCA AACTTTATAT CGTTCAAGCG CGTCCAGAAA CGGTTCGTAG CCGTGAAGAT
GTACAATTAA TTGAACGTTA CCACTTAAAG AGCCGTGGCG CGGTGATCTC TGAAGGTCGT
GCTATCGGTC ATAAAGTCGG TTCAGGTGTG GCTAAGGTAT TAACCTCTAT CGCGGATATG
GATCAAATCC AACCCGGCGA TGTGTTAGTA ACCGACATGA CTGACCCAGA TTGGGAACCT
ATCATGAAGC GCGCCAGCGC CATCGTGACT AACCGTGGCG GCCGTACCTG TCACGCGGCG
ATTATTGCCC GTGAATTAGG TGTACCAGCA GTGGTAGGTT GTGGTGACGT GACCGACCGC
ATCAAGAATG GTCAGTTAGT GACTGTTTCT TGCGCCGAAG GCGACACAGG TTACATCTAC
GAAGGTAAGC AAGAGTTCGA AGTGGTTTCA AACCGCGTTG ACGCACTGCC TGAATTACCG
ATGAAGATCA TGATGAACGT GGGTAACCCA GATCGCGCCT TCGACTTCGC TCGTTTACCA
AACGAAGGTG TGGGTCTAGC GCGTTTAGAA TTCATCATCA ACCGCATGAT CGGTATTCAC
CCGAAAGCGC TGCTTGAATT CAACCAACAA GACGCTGCGC TGCAGGAAGA AATCAACGAG
ATGATCGCAG GTTACGATTC TCCAGTTGAG TTCTACATTG CCCGCTTAGT CGAAGGTATC
GCCTCAATCG GTTCTGCTTT CTATCCGAAG AAAGTGATCG TGCGTATGTC AGACTTCAAG
TCTAACGAAT ACGCTAACTT AGTCGGTGGT GACCGTTACG AGCCAGAGGA AGAAAACCCA
ATGTTGGGCT TCCGTGGTGC GAGCCGTTAT ATCTCTGAAT CATTCCGCGA TTGTTTCGCG
TTAGAATGTG AAGCGATTAA ACGTGTTCGT AATGAGATGG GTCTGAAAAA CGTCGAAGTG
ATGATCCCAT TCGTACGTAC TGTTAAAGAA GCCGAGCAAG TGATTGGACT GCTGAAAGAG
CAGGGCTTAG AGCGCGGTAA AGATGGTCTA CGTGTCATCA TGATGTGTGA AGTACCGTCA
AACGCGCTGT TAGCGGATCA ATTCCTTGAG CACTTCGATG GTTTCTCTAT CGGTTCAAAC
GATTTAACTC AGTTATCGCT CGGTCTTGAC CGCGACTCTG GCATCATCAG CCACCTGTTC
GATGAGCGTA ACGAAGCCGT TAAGATCCTA CTGTCTATGG CCATTAAAGC GGCTAAGGCG
AAGGGCGCTT ACATCGGTAT CTGTGGTCAA GGACCTTCAG ATCACGCTGA TTTCGCCGCC
TGGTTAGTTG AGCAAGGCAT CGATACTGTA TCGTTAAACC CAGATACCGT GATTGATACT
TGGTTGTATT TAGCCGAAGC GCACGCTTGA
 
Protein sequence
MQQYVLWYQE LGMGDVNLVG GKNASLGEMI SNLANAGVQV PGGFATTSYA FNEFLEQSGV 
NQKIYDILAT LDVDDVNALA QVGAQIRQWV IDTPFQPALE QAIREAYDKL AAETSDASFA
VRSSATAEDM PDASFAGQQE TFLNVKGFDS VLVAIKHVFA SLFNDRAISY RVHQGYEHHG
VALSAGVQRM VRSDKAASGV MFTMDTESGN NDVVFITSSF GLGEMVVQGA VNPDEFYVHK
PILTQGHKAV VRRNIGSKLI QMVYSDDASH GKQVKIEDVA AEKRRQFSIN DAEVMELAKQ
AMVIEKHYGR PMDIEWAKDG NDGKLYIVQA RPETVRSRED VQLIERYHLK SRGAVISEGR
AIGHKVGSGV AKVLTSIADM DQIQPGDVLV TDMTDPDWEP IMKRASAIVT NRGGRTCHAA
IIARELGVPA VVGCGDVTDR IKNGQLVTVS CAEGDTGYIY EGKQEFEVVS NRVDALPELP
MKIMMNVGNP DRAFDFARLP NEGVGLARLE FIINRMIGIH PKALLEFNQQ DAALQEEINE
MIAGYDSPVE FYIARLVEGI ASIGSAFYPK KVIVRMSDFK SNEYANLVGG DRYEPEEENP
MLGFRGASRY ISESFRDCFA LECEAIKRVR NEMGLKNVEV MIPFVRTVKE AEQVIGLLKE
QGLERGKDGL RVIMMCEVPS NALLADQFLE HFDGFSIGSN DLTQLSLGLD RDSGIISHLF
DERNEAVKIL LSMAIKAAKA KGAYIGICGQ GPSDHADFAA WLVEQGIDTV SLNPDTVIDT
WLYLAEAHA