| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1588 |
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| Symbol | |
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| ID | 4252165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1878147 |
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| End bp | 1878809 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638118201 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_733722 |
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| Protein GI | 113969929 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0618082 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0591517 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTAG AAAACTTAAA AATAATTATT GCCGATGACC ATCCATTGTT TCGAAATGCA
CTACGCCAAG CCCTCAGTAG CGCCTTTGAA CACGCACAGT GGTATGAAGC TGACAGTGCC
GATGCTTTGC AATCCGTATT AGATTCACAA AATGTGAGTT ACGACTTGGT TTTGCTGGAT
CTGCAAATGC CTGGATCACA CGGCTATTCG ACGCTGATCC ATCTGCGCTC ACATTATCCC
GAACTGCCAG TAGTGGTGAT TTCGGCCCAT GAGGATATCA ATACTATTAG CCGTGCGATT
CACTATGGTG GCAGTGGATT CATTCCTAAA TCGGCATCGA TGGAAACCTT AAAAGAAGCA
CTCACCGCCG TATTATTTGG GGATATCTGG TTACCCGCAG GGGCTGAAAT CATTCCGATT
GAGGATGATG ATACGGATAA GATGGCCAGT AAACTCTCCG ATCTCACACC GCAACAATAT
AAAGTGTTGC AGATGTTTGC CGAAGGTTTG CTTAACAAGC AAATCGCCTA TGACTTAGGC
GTTTCTGAGG CCACCATCAA AGCTCATGCG ACTGCCATTT TTAGAAAGCT AGGCGTGCGT
AATCGTACTC AAGCCGTTAT TGCTTTAGGC CAGCTTGAAA TGGATAAAGT CGATTTAAGC
TAA
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| Protein sequence | MKLENLKIII ADDHPLFRNA LRQALSSAFE HAQWYEADSA DALQSVLDSQ NVSYDLVLLD
LQMPGSHGYS TLIHLRSHYP ELPVVVISAH EDINTISRAI HYGGSGFIPK SASMETLKEA
LTAVLFGDIW LPAGAEIIPI EDDDTDKMAS KLSDLTPQQY KVLQMFAEGL LNKQIAYDLG
VSEATIKAHA TAIFRKLGVR NRTQAVIALG QLEMDKVDLS
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