| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1580 |
|---|
| Symbol | |
|---|
| ID | 4252157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1864923 |
|---|
| End bp | 1865606 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638118193 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_733714 |
|---|
| Protein GI | 113969921 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.128837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTA TGAGAATTTT GGTTGTTGAA GATGATCTTA TTTTATCCCA CCATCTAAAA
GTGCAGTTAA GCGATTTGGG CAACCAAGTC CAAGTTGCTC TCACCGCCAA GGAAGGGTTC
TTCCAAGCGA CTAACTACCC CATCGATGTT GCTATCGTCG ATTTAGGTTT ACCCGATCAG
GATGGCATTA GCCTTATTCA ACAATTACGT GAAGAAGGTG TGAAAGCGCC AATCTTAATC
CTCACCGCTC GAGTTAACTG GCAAGATAAA GTCGAGGGTC TTAATGCTGG TGCCGACGAT
TACTTAGTCA AACCCTTCCA GAAAGAAGAA CTTGTCGCAA GGCTCGATGC CTTAGTCAGA
CGCAGCGCAG GCTTTGTCAA ACCCGTGATT ACCAGCGGTG AGTTAAAGCT CGATCTCGCT
GCCAAGCAAG TAACTCTAGG TAACGAAATT ATGGAAGTTA CCGCCTTTGA ATATCTGATC
CTTGAATATT TGATGCGCCA TTGTCACGAA GTGGTCGCCA AACAGCGACT CTTAGATGTG
ATTTATGGTG ACAAGGAAGG CGATCCCAAC ACCATTGAAG TCATGGTGAG CCGATTACGC
AAAAAACTCA CCCGTGATGG CATAGACAAC CCGATAGCCA CCATTCGTGG CCAAGGTTAT
AAATTCAATC TGCCATGCAA TTAA
|
|---|
| Protein sequence | MSIMRILVVE DDLILSHHLK VQLSDLGNQV QVALTAKEGF FQATNYPIDV AIVDLGLPDQ
DGISLIQQLR EEGVKAPILI LTARVNWQDK VEGLNAGADD YLVKPFQKEE LVARLDALVR
RSAGFVKPVI TSGELKLDLA AKQVTLGNEI MEVTAFEYLI LEYLMRHCHE VVAKQRLLDV
IYGDKEGDPN TIEVMVSRLR KKLTRDGIDN PIATIRGQGY KFNLPCN
|
|---|
| |