Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1546 |
Symbol | |
ID | 4252124 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1823885 |
End bp | 1825633 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638118154 |
Product | ATP-dependent protease |
Protein accession | YP_733681 |
Protein GI | 113969888 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1067] Predicted ATP-dependent protease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000113225 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTAAATG CTTATATGAA TTCACTCTTG ATACCATCAT CCTCACTCGC GCCTGAATTT AACCTTCCTA CCCTGCCGCA ATCGGCCACA GGATTAAAAA CCCTGCTTTT AGGGCAAGAA CGTGTATTGG ATGCCTTTAA GTTACATAAC GCCATTGCCG ATCAACAGCT GTATCTCGCC GATTTTCCGG GCATCGACCG ACAATTAATC ATGCAAGCCC TAATGGAAAC GGTCGAGCCG TTACCCACCG CCTATTTAGT GGCGGCCCAG CCAGTGGGGA AAACCGTACC ATTTCGTTGG CAATACGAAG CGCCGCTTGA TAACCAAGAC GCGATTGCTG AAAAAAATGT CAGTTACCGT TACCTGAGTG GCAATATCCG CCGTGCTGAT CTTCTCGGCC GTATGGTGCA ATCGGCAAAT GGCAGTCAGT ATCAACCCGG TGCCCTCGCC CAGTGCCACT ATGTGTTTAT CTGCGCCGAA TCTCTGTGGA AACGCGAAAG CCTATGGGAT CTGGTGATGC AAATTCTGAC ACAAAAAGAG TATCAGATAA GCAGTCACCT AAGCCCTATT CCGTTAAATT GTAAAATCAT TCTTATCGGC GCAGGCTTAA TCTACAGCCA AGTCCGCTCC GAAGACTGGG AATTTCAGCG TCACTTTAGC CTGCTGGCAG AGCTGGCGAG TGAACTCGAT CTGACCCGCT TTAAAGAAGT GCAATATGCC AGTTGGTTAC AAGCCGTGGC TCAGAGCGTT GAGGTTAGCC TAGAACAATC GAGCCTTGCG CCACTGTTTA GACACAGCGC AAGATTAACC GAGCATCAAC GCCGTTTAAG CCTGTCGATG CTCGATTTTG CCCAATTAAT GGCTCAGGCT AAGGTGTATA GCGGGAAACC CAGCATCAAT GCCGCCAGTG TTGAACACGC GCTCGAGCAA GCTAACTATC GCCATAACAG CTCTGAGGAG TTTTCTGGGC AGAGTTTTGA TGACAATTTC ATAAATCTGC CAACTGAAGG CGCTATGGTA GGTCAGATTA ATGGCCTAAC GGTTATCGAT GCGATTGACC ATAGTTACGG CGAACCCGCG CGGATCACCG CAACCGTGCA CTATGGTGAT GGCGAAGTGG CAGACATTGA AAGAAAGTCC GAGCTAGGTG GCAATATCCA CGCCAAGGGC ATGATGATCC TTTCTGCCTG TTTGTATCGC ATTTTTGGTC GTGATGCTCC GCTACACCTT AATGCCAACA TCGTATTCGA ACAGTCCTAT CAAGAGATCG ATGGTGATAG CGCCTCGCTC GCAGAGTATT GTTGTTTGAT GTCGGCGATT GCCGAACAGC CGATTATTCA GTCGCTCGCG ATTACTGGCG CGTTGGATCA ATTTGGCAAT GTGCAAGCGA TTGGCGGCAT AAATGAGAAA ATTGAAGGCT TTTTCAATTT GTGTGAACGT CGTGGTCTCA CGGGTGAACA GGGCGTGATT ATGCCTAAGT CGAACGTTCT GCAGCTTAAC CTACACCCGA AAGTCATTAC AGCTGTAGGC AAAGGCCAAT TCCATATCTA TGCCATTGAG CATATGGACG AAGCGGTGGA GCTATTGATG CAGATGCCAG CAGGGGTTGC CAATGAGGAT AATGACTTCC CTGCAGACTC CTTGTATGGC CTAGTGCAAG AACGGCTCGA TAAGCTCGCG GGGAACGGCG AGGAAGAAAT TAGTTTTATG ACGAGGTTAC TCGCAAAACT GGGATTATTT CGCCATTAA
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Protein sequence | MVNAYMNSLL IPSSSLAPEF NLPTLPQSAT GLKTLLLGQE RVLDAFKLHN AIADQQLYLA DFPGIDRQLI MQALMETVEP LPTAYLVAAQ PVGKTVPFRW QYEAPLDNQD AIAEKNVSYR YLSGNIRRAD LLGRMVQSAN GSQYQPGALA QCHYVFICAE SLWKRESLWD LVMQILTQKE YQISSHLSPI PLNCKIILIG AGLIYSQVRS EDWEFQRHFS LLAELASELD LTRFKEVQYA SWLQAVAQSV EVSLEQSSLA PLFRHSARLT EHQRRLSLSM LDFAQLMAQA KVYSGKPSIN AASVEHALEQ ANYRHNSSEE FSGQSFDDNF INLPTEGAMV GQINGLTVID AIDHSYGEPA RITATVHYGD GEVADIERKS ELGGNIHAKG MMILSACLYR IFGRDAPLHL NANIVFEQSY QEIDGDSASL AEYCCLMSAI AEQPIIQSLA ITGALDQFGN VQAIGGINEK IEGFFNLCER RGLTGEQGVI MPKSNVLQLN LHPKVITAVG KGQFHIYAIE HMDEAVELLM QMPAGVANED NDFPADSLYG LVQERLDKLA GNGEEEISFM TRLLAKLGLF RH
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