Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1501 |
Symbol | |
ID | 4252079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1762492 |
End bp | 1763826 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638118100 |
Product | RDD domain-containing protein |
Protein accession | YP_733636 |
Protein GI | 113969843 |
COG category | [S] Function unknown |
COG ID | [COG1714] Predicted membrane protein/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.561992 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000145013 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCAAC AACAAACGGA CTTGGGCAAA GATCCAAGAA CTATGGTCAC CCCTAAGGCA TTCACTATTG CCGAATCTGT GCTTTACACC CCGCTAGCGA CGCCATTAAG GCGGGCGCTG GCGATGTTAA TCGACGGTTT ATTCATCACT ATTTTAGCCG AACAAATGGA TTGGCTGTTT GTTCTGCTGG TGGTGGGGAT TATTTATATC GAGAAACGCA GTCGCCAGTT TGGTCGCTTA CTCAAATGGG GCCTCTACGC CGCCATGCTG GGATTAATGC TCTTTAGCTC GGCGGGAAAT TTGTGGAATT TCCATCAATC GAATCGATCC ACCCGCGAGA AGGTCTCCGC GCCCCAGGAT ATTAACGCTG TTGTTAAGGC GATTCCTGGT CTTGTCTCCC TCGGACTCTG TGACAATACC GATTGTGCCC GTGAACAGAT CCGTGCTTTG CAGCAGACAC TCGAAAATGG GCCCATGGAG GGAATGTCGG CAGCTGAGCG CCGCGATATG GTATTAGATA CTTTAGCGAG CACGGAGTTA TCCGAGGCCG ATAAAGCGCA GTTACGTGAT GAAATGATGG CGGGCAGACT CTGGCCCGAG GTGAAGGTGT TTGAAGTCAC CCTAGACTCC ACTAAGGGCT CAGCTAAAAA CTCAACCAAG GAGCCAAACA CATTATCACC GCCGCCACAG CCAAGTCCGT CGCTCGCAAA TCTGTCGTCC GCTGGCAAGC TTGATGCCGT TCCCGTATCA GAACCGCGAA CCGATGGATT AGCCAACGCT CAAACCGATA ATCGAGCGGC CATCGAAAAC GCTCCCTTAG TTCTTGACAC CAACCTCAAT CCTTCGCATC AAACCGAAAG CCGCAACAGT GAAACCAATG ATGAGGAAGA GAGTGACACC CGCAGTGTGC TGGCGTGGAT CAAAGGCTTT ATGAGCGATA TGGGTTTAGG TTTTGGCTGG GCCGCATTTT ACTTCACTGT GTTTACCGCC AAATTTGATG GTCAGACCTT AGGTAAGAAA CTCTTAGGCA TCCGCGTTAT CCAACTCGAT GGCGCTAAAA TCAGCCTTTG GGGGGCATTT GGCCGTTATG GTGGTTATGC GGCGGGCTTC ACGACGGGCT TACTGGGCTT TATGCAGATA TTTTGGGATG CCAATCGGCA GGGGATCCAA GATAAAATAT CTTCCACAGT CGTGATAGAC TTAGCGCAAA TGCATAAAAA GCAACAATTA GAGCAGCAAC AGGCGCAGGC TGAACATGCA TTGGCCGACG TGCCAACACA GAATAATGCG ACGTCTGCTC ACCTTACAAC AAGCACCCGT TCGGAGCACC TATGA
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Protein sequence | MKQQQTDLGK DPRTMVTPKA FTIAESVLYT PLATPLRRAL AMLIDGLFIT ILAEQMDWLF VLLVVGIIYI EKRSRQFGRL LKWGLYAAML GLMLFSSAGN LWNFHQSNRS TREKVSAPQD INAVVKAIPG LVSLGLCDNT DCAREQIRAL QQTLENGPME GMSAAERRDM VLDTLASTEL SEADKAQLRD EMMAGRLWPE VKVFEVTLDS TKGSAKNSTK EPNTLSPPPQ PSPSLANLSS AGKLDAVPVS EPRTDGLANA QTDNRAAIEN APLVLDTNLN PSHQTESRNS ETNDEEESDT RSVLAWIKGF MSDMGLGFGW AAFYFTVFTA KFDGQTLGKK LLGIRVIQLD GAKISLWGAF GRYGGYAAGF TTGLLGFMQI FWDANRQGIQ DKISSTVVID LAQMHKKQQL EQQQAQAEHA LADVPTQNNA TSAHLTTSTR SEHL
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