Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1500 |
Symbol | |
ID | 4252078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1761278 |
End bp | 1762246 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638118099 |
Product | cysteine synthase |
Protein accession | YP_733635 |
Protein GI | 113969842 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0031] Cysteine synthase |
TIGRFAM ID | [TIGR01136] cysteine synthases [TIGR01139] cysteine synthase A |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00243522 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGCAAAA TTTTCGAAGA CAATTCATAT ACTATTGGCA ACACCCCGTT AGTGCGTTTA AACCGCGTAA GCCAAGGTAA AGTGCTGGCA AAGGTCGAAG CACGTAATCC AAGTTTCAGT GTCAAATGCC GTATCGGTGC CAATATGATT TGGGATGCCG AGAAAAAAGG CCTGCTCACC AAAGATCACG AACTGATTGA GCCTACCTCA GGTAATACCG GGATTGCCTT AGCCTATGTG GCGGCCGCCC GTGGTTATAA GCTGACGTTA ACTATGCCAA ATACTATGAG CTTAGAACGT CGTAAACTGC TTAAAGCCTT AGGTGCAAAC CTAGTGCTGA CCGAAGGCGC AAAAGGCATG AAAGGTGCTA TCGATAAAGC GGAAGAAATC CGTCAATCGG CGCCTGAAAA ATACATTATG CTGCAGCAGT TTAATAACCC TGCTAACCCT GAAATCCACG AAAAAACCAC AGGTCCAGAG ATTTGGAATG ATACCGATGG TGCTGTAGAT GTGTTTGTTG CGGGTGTAGG TACTGGCGGT ACTATCACAG GTGTGAGCCG TTACCTGAAA AAAGTGGCTG GCAAAGCCAT TACTTCTGTT GCGGTAGAAC CCGCAGATTC ACCGGTTATC ACCCAAACCC TAGCGGGATT ACCAGTGCAA CCAGGTCCGC ACAAAATCCA AGGTATTGGC GCAGGTTTTA TCCCTGGTAA CTTAGATCTT GAGTTAATCG ATCGCGTTGA AACCGTCACC AACGATGAAG CCATCGACAT GGCCCGCCGC TTAATGCAAG AAGAAGGCAT TTTAGTCGGT ATTTCTTCTG GTGCTGCTGT GGTTGCCGCA AACCGCATCG CTGCTCTACC TGAATTTGCG GATAAAAACA TTGTGGTTAT CCTGCCTTCA GCTGCCGAAC GTTACTTATC TTCGGTACTG TTCCAAGGCC AGTTTGGCGA CGAAGAAAAC ATTCAGTAA
|
Protein sequence | MSKIFEDNSY TIGNTPLVRL NRVSQGKVLA KVEARNPSFS VKCRIGANMI WDAEKKGLLT KDHELIEPTS GNTGIALAYV AAARGYKLTL TMPNTMSLER RKLLKALGAN LVLTEGAKGM KGAIDKAEEI RQSAPEKYIM LQQFNNPANP EIHEKTTGPE IWNDTDGAVD VFVAGVGTGG TITGVSRYLK KVAGKAITSV AVEPADSPVI TQTLAGLPVQ PGPHKIQGIG AGFIPGNLDL ELIDRVETVT NDEAIDMARR LMQEEGILVG ISSGAAVVAA NRIAALPEFA DKNIVVILPS AAERYLSSVL FQGQFGDEEN IQ
|
| |