Gene Shewmr4_1469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1469 
Symbol 
ID4252047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1717553 
End bp1720036 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content50% 
IMG OID638118068 
Producthypothetical protein 
Protein accessionYP_733604 
Protein GI113969811 
COG category 
COG ID 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR03502] extracellular lipase, Pla-1/cef family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.92624e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGAC TCATTTTGTG TGTTGCGATT GCATCAGCAC TGGGCCTCAC AGGATGTGGA 
GAGGACAGTT ATAACGAACT CAAGGATAAG ACAGACCCGC TCATCCCTGA ATCCCATATG
GTGTTTGACC CCGCGAATGC TAAAGTGCCT TTGCCTAATG ATTTGTTGTT TAGCGGCACT
ACAGACGGCA CCTTATCAAT CCCGGGGGAA AGTTCGGGGA ACTATGTCGA TCCGCAAATT
GCTCTTGGTG CCTTAGATGG ATGGTCAACT ACATCTCCCA TTTCAATCGA TCTCGAACTC
GCTAAAGATC ACGATGGCAC ACAACTGACC CTGATGGCCG CATCGGTTGC CCAACCGGGC
GCAGTGAGAA TGTTTGAGGC CACAGTGGGT GGTCCATTGT CATCTGATCC TGAATGTACC
ACTAAACCGT CAGTATCTGC CTGTAAAGTC GGCGATGAAT TGCAATTTGG TGTGGATTTT
GTGTCGATGG CATCGGGTAA CAAAGTCGTT ATCGTGCCAC TCAAACCGCT AAAAGCCGGC
CAGTCTTATA TTTATGCGAC AACCAAGTTA ATCCAAGATT CAGAGGAACG AGGCATTGCC
CCTTCAACGA CCTATGGTAC GTTGAAGATG GACATCAACA CCTTACCCCT AGAAACGCCT
GATCAATTGA TGCTGCAAAC CTTGATCAAC AGTTATGAAA AGGGCATGGC TGCGGCACAT
AATGTTGATA CCTCAACCAT TACCTATTCA GGCTTGTTTA CCACTCAATC GGTAGCAAAC
GTCTATGAAA CCACAAAACT CTTGATGGCG CAGGGCGCGC CTTATGCCCC AAGTTTTGCG
CAAATGCCCA CCCCTGCGGG TTACACTGTG GCTCAGGCTG CTGGTTTAAC TCCAGCAGAT
GGCGCGGCGT ATGTAGTATC GAATCTAGCC GATGTTTATA CCGCTAAGAT TAAATTGCCG
ATTTACGGTG ACTGTTCTTC GGTCAGTTGC TTGTCATCTG CAGGTCAGCC GCTGATCAAT
GGCCGCTGGA AAGCCCAAGG TGATAGCCCT GTTTCGGTAT TATTAGCGCT GCAAGCGGGT
ACCTTAAGTC AAACCAACTT TGGTATGCAG GCAGTAGCGA ATGGGATTGC AAATCCTGCC
GATGCCTTAG CGAATCCTTC TCTGATGGCG GGTAAAACCT GGTTGCTCGA TGATGGAACG
GCAGCGGATA AAACCAAGCA TTTAACCAAA TTTAACCCCA TCCCTGCGAT TAAAGGTTAT
GAAACGGTAC CTGTACTGAT TTCTATGCCA AATGCGACTA AACTCGCGGC CTTCTATCAG
CAACAAGGGT TAACCTTTAC CCCACCGACT TCTGGCTGGC CAACGACGAT TGCGCTACAT
GGTTTAGGCG GCGGTAAGGA AATGTCATTA GCCTATGCGG GCAGTTATGC AGCTATGGGC
GTGGCAACGG TAGCCATCGA TATGCCTTTA CATGGTGCTC GCTCGTTCGA TGCCAATGGC
GATGGGGTTT ACGAAGTATC GGCAACCGAT CCTTCCTTCG GTAACGTGAT TGGTACGCCT
GATGCCTTTA AAAATGGTAA TCCACTCGTC TTCGTGAATA TCTCAAGCAC GCTATCGGTG
CGGGATAACT TCCGTCAGGC CACCATGGAT CACCTTGGCG TGCGTTTAGC CTTAACGGGG
TTAGCGCAGG GGCTTGCACA GGCTAATCAA CCACAAGTAT TCGATATTTC CAAGATTAGC
GCGCAGGGCT TAAGTTTAGG TGCGATTGTC GGTACCGACT TTGCGACTTA TGCCAGCACG
GGCATGAAAA ATCCAAGCAC GGGTGAAGCG CTACCTAACC CTTATGCCAT CAATGCGGTC
TCTCTGGCGG CGCCAGCGGG TGGTTTAGCG GGCGCGTTTG CTGGTTCTGC GACCTTTGGC
CCAGTGCTGT TTAGCAATGT GACTGCTTCT GCAACGTTCC AAGCATTAGT GGATAAAGCC
AATACTGCGG GATACGAGCC TGGCAGCCCA GAATATGCGG CATTAGTACA AGGGGTTTAT
GCGCAGTTTA TTCCAACCTT TGCCTTTGCG GTGCAAACGG CGGTGGATTC AGCGGATCCG
GTTAACCATG CAGGTATGTT AAAAGCAACG GGATTACCCG TGCACTTAAT CGAAATCGCG
GGTGATGGTA ACGGTAACTT AGCTGACCAA GTGTTACCTA ATCGCGTCGA TAACTTCCCA
CTCTCAGGCA CTGAGCCGTT GATCTCGGCA ATCGGTCTGC CTTGTGTGGA TGCAACCACC
AAAGGTTCTG GTGCGGTGCG TTTTGCTAAG GGGCACCATA GCTCAATTGT TGACCCAAGT
GAGAAGAGTT CAACGGATGG TATGGCCGCT GCGGCAACCG TTGAGATGCA GACGCAAGTG
GCGACCTATG CTTCTACCGC AGGTAAAGGT GAAGCGACGA TTTTCGTCAC CGATCCAAGC
GTGATTTCGA CCTGTTCTAA CTAG
 
Protein sequence
MKRLILCVAI ASALGLTGCG EDSYNELKDK TDPLIPESHM VFDPANAKVP LPNDLLFSGT 
TDGTLSIPGE SSGNYVDPQI ALGALDGWST TSPISIDLEL AKDHDGTQLT LMAASVAQPG
AVRMFEATVG GPLSSDPECT TKPSVSACKV GDELQFGVDF VSMASGNKVV IVPLKPLKAG
QSYIYATTKL IQDSEERGIA PSTTYGTLKM DINTLPLETP DQLMLQTLIN SYEKGMAAAH
NVDTSTITYS GLFTTQSVAN VYETTKLLMA QGAPYAPSFA QMPTPAGYTV AQAAGLTPAD
GAAYVVSNLA DVYTAKIKLP IYGDCSSVSC LSSAGQPLIN GRWKAQGDSP VSVLLALQAG
TLSQTNFGMQ AVANGIANPA DALANPSLMA GKTWLLDDGT AADKTKHLTK FNPIPAIKGY
ETVPVLISMP NATKLAAFYQ QQGLTFTPPT SGWPTTIALH GLGGGKEMSL AYAGSYAAMG
VATVAIDMPL HGARSFDANG DGVYEVSATD PSFGNVIGTP DAFKNGNPLV FVNISSTLSV
RDNFRQATMD HLGVRLALTG LAQGLAQANQ PQVFDISKIS AQGLSLGAIV GTDFATYAST
GMKNPSTGEA LPNPYAINAV SLAAPAGGLA GAFAGSATFG PVLFSNVTAS ATFQALVDKA
NTAGYEPGSP EYAALVQGVY AQFIPTFAFA VQTAVDSADP VNHAGMLKAT GLPVHLIEIA
GDGNGNLADQ VLPNRVDNFP LSGTEPLISA IGLPCVDATT KGSGAVRFAK GHHSSIVDPS
EKSSTDGMAA AATVEMQTQV ATYASTAGKG EATIFVTDPS VISTCSN