| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1447 |
|---|
| Symbol | |
|---|
| ID | 4252025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1694062 |
|---|
| End bp | 1694874 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638118046 |
|---|
| Product | exonuclease III |
|---|
| Protein accession | YP_733582 |
|---|
| Protein GI | 113969789 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00261577 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG TTTCTTTCAA TATCAATGGA TTGCGTTCTC GCCTGCATCA ATTGCAAGCG
TTAATCGACA GCCATCAGCC CGATATTATC GGCCTGCAAG AAACCAAAGT GCACGATGAA
GCCTTCCCGC TCGCCGAAGT CGAGGCCATG GGCTATCACG TGCATTACCA CGGCGGCAAG
GCACACTATG GCGTAGCCAT GCTCTCCAAA GTCGCCCCAA TTAAGGTGCA AAAGGGTTTT
GCAACCGATG GAGAAGATGC GCAGCGCCGC ATGATTATCG GCACCTTTGC TCAGGCAAAT
GGCCGTCCGT TAACTGTGTT GAATGGTTAT TTTCCTCAGG GCGAAAGCAT CGACCATCCG
ACAAAGTACC CTGCTAAACG TAAGTTTTAT CAGGACTTAA TGGCGCATTT GCACGCAAAT
CATAGCAACG ATGAAGATAT AGCCATCATT GGTGATATCA ATATTTCGCC CATCGATTTA
GATATCGGCA TTGGTGAAGT CAACCGCAAA CGTTGGCTAA AAACCGGTAA ATGCAGTTTC
CAACCCGAAG AGCGTGAATG GCTCAAGACC CTGCAAGATT GGGGATTGGT GGACACCTTC
CGTCAACTAC ACCCCGACCG CAGCGAGCGT TATTCATGGT TCGATTACCG CAGCAAAGGC
TTCGATGATA ACCGCGGCCT ACGCATCGAT GTGATCTTAG CCACGCCGTC ACTGGCAGCG
CGTTTAGTCG AATCCGACGT CGATTACGAT CTGCGCGGCA TCGATAAACC CTCAGATCAC
GCACCAATTT GGAGCACCTT TAAAGAAGCC TAA
|
|---|
| Protein sequence | MKIVSFNING LRSRLHQLQA LIDSHQPDII GLQETKVHDE AFPLAEVEAM GYHVHYHGGK
AHYGVAMLSK VAPIKVQKGF ATDGEDAQRR MIIGTFAQAN GRPLTVLNGY FPQGESIDHP
TKYPAKRKFY QDLMAHLHAN HSNDEDIAII GDINISPIDL DIGIGEVNRK RWLKTGKCSF
QPEEREWLKT LQDWGLVDTF RQLHPDRSER YSWFDYRSKG FDDNRGLRID VILATPSLAA
RLVESDVDYD LRGIDKPSDH APIWSTFKEA
|
|---|
| |