Gene Shewmr4_1424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1424 
Symbol 
ID4252002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1662835 
End bp1663851 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content49% 
IMG OID638118023 
Productaspartate semialdehyde dehydrogenase 
Protein accessionYP_733559 
Protein GI113969766 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01296] aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.00384e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAGG AATTTAATGT TGTCGTTTTA GGTGCATCGG GCGCAGTGGG TCAAACTATG 
ATTGAGATCC TCGAAGAGCG TAACTTCCCG GTAGCGAACT TATACCCTTT AGCCAGTAGC
CGTAGCGCCG GTGAAACGGT CAGCTTCCAT GGCAAACAAG TTACCATTTT GGACGTCGAA
ACCTTCGATT GGAGTCAAGC ACAAATAGGC TTTTTCTCTG CCGGTGGCGA TGTGTCGGCC
AAGTGGGCGC CTATTGCCGC TGAAGCGGGT TGTGTGGTGA TCGATAACAC TTCGCACTTC
CGCTACGACA TTGATATTCC ATTGGTTGTG CCTGAGGTTA ACCCCCATGC TATTGCCGAT
TTCCGCAACC GTAACATCAT CGCCAACCCG AACTGCTCGA CCATCCAAAT GCTGGTGGCA
CTAAAACCGA TTTACGACAC TTACGGTATC AGCCGTATTA ACGTTGCGAC CTACCAGTCT
GTCTCTGGTA CAGGTAAAAA GGCGATTGAA GAGCTGGCAA AACAATGCAC TAAGTTGCTG
CAAGGTCTGC CTGCTGACGC TGAAGTTTAT CCAAAGCAAA TCGCGTTTAA CGTATTGCCG
CAAATCGATA AATTTATGGA TAACGGCTAC ACCAAAGAAG AAATGAAAAT GGTCTGGGAA
ACCCAGAAGA TTTTCGGTGA TGACGAAATC CTCGTCAACG CAACGGCCGT GCGTGTGCCT
GTCTTCTATG GCCACTCAGA AGCCGTACAT ATCGAGACGC GTCAACCTGC TGATGCAGAA
GATATTAAAG CTTTGCTGCG CGATGCCGAA GGAGTGGTAT TGTTCGAATC CGATGACGAA
TATCCAACGG CAGTGACCCA TGCAGCGGGT ACCGATCCAG TCTATGTGGG CCGTGTGCGT
AAGGATATCT CCCATTCTCA CGGTATTAAC CTTTGGGTGG TGTCGGACAA TATTCGTAAA
GGCGCAGCCT TAAACAGTGT GCAAATTGCT GAGATTTTAG TGAGAGATTA TTACTAA
 
Protein sequence
MSQEFNVVVL GASGAVGQTM IEILEERNFP VANLYPLASS RSAGETVSFH GKQVTILDVE 
TFDWSQAQIG FFSAGGDVSA KWAPIAAEAG CVVIDNTSHF RYDIDIPLVV PEVNPHAIAD
FRNRNIIANP NCSTIQMLVA LKPIYDTYGI SRINVATYQS VSGTGKKAIE ELAKQCTKLL
QGLPADAEVY PKQIAFNVLP QIDKFMDNGY TKEEMKMVWE TQKIFGDDEI LVNATAVRVP
VFYGHSEAVH IETRQPADAE DIKALLRDAE GVVLFESDDE YPTAVTHAAG TDPVYVGRVR
KDISHSHGIN LWVVSDNIRK GAALNSVQIA EILVRDYY