Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1421 |
Symbol | |
ID | 4251999 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1657839 |
End bp | 1659767 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638118020 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_733556 |
Protein GI | 113969763 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0305521 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGCAAT GGGGATTGGG CGATGGACTC GAGCTGCTCT CTCTACTACA ACACTGGCAA ACGCAGACTC AGACTCAGGG CAACACACGA CTGTTAGTCA AAGTGTTTGA GCCTAATCCC ATTAACGATT ACGAACTTAA ATTACTTTGG GATCAATCGC AAAGCTTAAT TTCCAAGTCT CATTTACAAC CGATTGCCAA TGCCATCCTT AAGGCAAAAC CTGCGCGCAT TATAGGGTGC CAGAGATTAA TCTTTGATGA CGGCCGTATC ACGGTCGATT TGCATTTTGG CGACCTACAC ACAGCACTCA GTCAACTGCC CCACAGCGCT GATCATCCCA TTCAGCAATG GCTGGTTTTA CCGCATTTGG CGGCGCAGCT TAATGGCAAG CAAGTCTGGC AAATGGCCCG TTTGAGCACC GATGATGCCC AGCTGATTGG GGTCAATTTG GCTGAAACCC TGCAACAGCT TGCCCACAAG AGTGGCTTTA GCACGCTTAA CGTCAGCCAA GATGCCTTGA ATGGTGATGC AAGTGATGCA CTGCAAAGCC ATATTATCAC CGATGAGATT TTACTCCATG AGCGCAAACT GCTACGCCAG CAAGCCGATA CCGCTCAGGC ATTTACCCCA AAACCTACAG CGCTCGCCAC TAAAGACCAT CCCATTGCTA TCGTCGGTGG CGGACTGGCA TCGGCGAACC TAATGCTATC CCTTGCCGAA CGAGGCCAAA GTAGCACATT GTTTTGTAAG GATAATGAGT TAGGCCAAGG CGCATCCGGC AATCGCCAAG GGGCGATTTA CCCCCTGCTC ACGCCTGAAA ATGATGAGCT GAGTCGTTTT TTCCAACAGG CATTTTTGTT CAGCCGCCGC CGCATCGAGG CGCTGAGCCA TGCGTCGATG ATGGAGACAG AAGCCGCCCC TACTATTACC GCGATTTCCC ATGACTTTTG TGGGGTACTG CAAACGGGTC ATGATGAGCG CAGCCAACAA CGGTTGGATA AAATCATCCA AAGTCAGGAC TGGCCGGCGG AAATCGCCTA CGCCGTTGAT GCGAATGAAG CCAACGAGAT AGCTCAAATA GGTATTGATA AGGCTGGATT TTTTTATCCC CTCGGGGGCT GGGTATGCCC ATTTGAATAC GCCAAGGCTG CGGTAGATAA AGCCTCGCAG CTTGCCAATG TGCAATGCCA TTTCAATACC GAGATCACCG AAATCGAGTG TGATGCAAAG GCTTGGTATC TCCACAGTCA AGGCCAGCGT TTTGGACCAT TCCGCCAACT CGTGCTCGCC AATGGCGCGC AGCTCACCCA ATTTTCGGCC AGTGAGCGAT TACAGATAAG CCCGTTTCGC GGCCAAGTGA GCCACGTCCC CGCCCAATTT AAGCTGAGCC AACTGGCGAC AGTGTTATGC GCGAACGGTT ACCTCACACC GAGTCATCAA GGCTTGCATT GCCTCGGCGC CAGTTATGTC AAAGCGGCGG AGCACCTCGA TTTTTGCCCA CAGGAGCAAT GGGAAAACCT CGGAAAAATG CAAGAAAGCT ACCCCAACCA AGCCTGGGTT GACGATATCG ACATCAGCGA CAATAGCGCC CGTGTCGGCG TGCGGATGGT GACGCGGGAT CATTTCCCCA TGATGGGCTG TGCGCCCGAT GTGGCTGAAA TATTGGCGCG CTATGAACAG CATCAACTCA ATCAGCAGCA GGCCGAACAA AGCAAGCATT ATTGGCAAAC GACCCCGGCT CCGATCCTCG ATGGCCTTTA TATCCTAGGT GGCTTAGGGT CGCGGGGATT AAGCTCTGGC CCCTTGGCGG CCGAATGTTT AGCGGCACAA TTAACCGGTG AGCCGCTGCC ACTAGATTGG CCCACCTTAA ATAAACTCAA CCCAAATCGG ATGTGGCTAC GCAAATTACT AAAGGGTAAA GCACTTTAG
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Protein sequence | MGQWGLGDGL ELLSLLQHWQ TQTQTQGNTR LLVKVFEPNP INDYELKLLW DQSQSLISKS HLQPIANAIL KAKPARIIGC QRLIFDDGRI TVDLHFGDLH TALSQLPHSA DHPIQQWLVL PHLAAQLNGK QVWQMARLST DDAQLIGVNL AETLQQLAHK SGFSTLNVSQ DALNGDASDA LQSHIITDEI LLHERKLLRQ QADTAQAFTP KPTALATKDH PIAIVGGGLA SANLMLSLAE RGQSSTLFCK DNELGQGASG NRQGAIYPLL TPENDELSRF FQQAFLFSRR RIEALSHASM METEAAPTIT AISHDFCGVL QTGHDERSQQ RLDKIIQSQD WPAEIAYAVD ANEANEIAQI GIDKAGFFYP LGGWVCPFEY AKAAVDKASQ LANVQCHFNT EITEIECDAK AWYLHSQGQR FGPFRQLVLA NGAQLTQFSA SERLQISPFR GQVSHVPAQF KLSQLATVLC ANGYLTPSHQ GLHCLGASYV KAAEHLDFCP QEQWENLGKM QESYPNQAWV DDIDISDNSA RVGVRMVTRD HFPMMGCAPD VAEILARYEQ HQLNQQQAEQ SKHYWQTTPA PILDGLYILG GLGSRGLSSG PLAAECLAAQ LTGEPLPLDW PTLNKLNPNR MWLRKLLKGK AL
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