| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1408 |
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| Symbol | fadJ |
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| ID | 4251986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1639736 |
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| End bp | 1641865 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638118007 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_733543 |
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| Protein GI | 113969750 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02440] fatty oxidation complex, alpha subunit FadJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.682572 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000547588 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAAAAGA CATTTAATTT AACCCGCCGT GAAGACGGTA TCGCCATTCT AACGATGGAC
GTACCCGGCG AAACCATGAA TACCCTCAAG GCAGAATTTG GCCCTGAGAT CAGTGAGATT
CTGTCTGAGA TTAAACGCGA TAGCAGTATC CGTGGCCTAG TGCTGATTTC GGGTAAAAAA
GACTCCTTCG TAGCTGGGGC GGATATCTCT ATGCTCGACG CTTGCCAAAC GGCGGGCGAT
GCTAAAGCCT TATCCCAACA AGGGCATGTG GTGTTTAACG AGTTAGAAGC CTTGAATATC
CCTGTGGTTG CCGCGATACA TGGCGCTTGT TTAGGGGGCG GTTTAGAGCT TGCGCTTGCA
TGCCATCAAC GTGTGTGTAG TGATGATGGC AAGACCATGC TGGGTGTACC CGAAGTGCAA
CTCGGTTTAT TACCCGGTGG CGGCGGTACT CAGCGTTTGC CTCGTTTAGT GGGGATCACC
ACTGCCTTGG ATATGATGTT GACTGGTAAA CAAATCCGTC CGAAACAAGC GTTAAAGATG
GGCTTAGTTA ACGATGTGGT GCCACAGACG ATTTTACTGC AAACCGCGGT GGAAATGGCG
CTCGCGGGTA AGCGCACGGC GAAACCAGTT AAAAAATCGC TGGTCAATCA ATTACTCGAA
GGTACAGGAT TCGGTCGTAA CATTATTTTC GATCAAGCCG CCAAGCAAGT CGCTAAGAAA
ACCCAAGGCA ACTATCCTGC GCCGGCAAAA ATTATTGATT GCGTGCGCCA AGGTATGGCT
AAGGGAATGC AAAAAGGGCT TGAGGTGGAA GCCAGCCATT TTGCAGAGCT GGTGGTGTCG
AAAGAATCAG AGGCGCTGCG CAGTATTTTC TTTGCCACCA CAGAGATGAA GAAAGAAACT
GGCGCCGAAG GGGCGACACC ACGTAAAGTC AAAAAAGCCG TGATCTTAGG TGGCGGTTTG
ATGGGCGGTG GTATTGCTTC GGTCACGACG ACTAAGGCTA AAATTCCTGC AAGGGTAAAA
GACATTAACG AAAAGGGCTT AAGCAATGCG CTTTCTTACG CCTATAAGTT ATTGGATAAA
GGCGTTAAAC GTCGTCATAT GACGCCAGCC GTTCGCGACA ATTTAATGGC ACTGATGACA
ACGACGACCG AATATAAAGG CGTTAAGGAC GCTGATATTG TTGTTGAAGC CGTATTTGAG
GATTTAGCGC TTAAACATCA GATGGTTAAA GATATTGAGC GTGAATGCGG TGAGCACACG
ATTTTTGCAT CTAACACCTC ATCTTTACCC ATTGGCCAAA TTGCACAAGC GGCCAGCCGT
CCTGAAAATG TGATTGGCTT ACATTATTTC TCACCAGTAG AAAAAATGCC GTTGGTGGAA
GTGATTGCCC ATGCGAAAAC GTCTCCTGAG ACGATTGCTA CCACAGTGGC CTTTGCCCGC
AAACAGGGTA AAACGCCAAT CGTGGTACAA GACGGTGCCG GTTTTTATGT TAATCGTATC
CTCGCACTTT ACATGAACGA AGCTGCGCAA TTGCTGCTGG AAGGGCAGAG TATTGAGCAC
TTAGACAAAG CCTTAGTGAA GTTCGGTTTC CCCGTTGGCC CTATCACTCT GCTCGATGAA
GTGGGTATCG ATGTGGGTGC TAAAATCGCT CCAATCCTTG AAAAAGAACT GGGTGAGCGC
TTTAAAGCCC CTGCAGCCTT CGATAAGTTA CTGAGCGATG ATAGAAAAGG CCGTAAAAAT
GGCAAAGGTT TCTATCAATA TGCTGCTGGC AATAAAGCGC CGAGCAAGAA GAAAGCCGTG
GATGAAAGTG TATATGGCGT ATTAGGTATC AAACCGGGTA TCGATAAAGA AATGAGCGCG
GTAGCGGAAC GTTGTGTCGT GCAAATGCTC AATGAAGCTG TGCGCTGCTT AGATGACGGC
ATTATTGCTT CACCACGCGA TGGTGATATT GGCGCTATCT TCGGTATTGG TTTCCCACCA
TTCTTGGGTG GCCCATTCCA CTATATCGAT ACTCTAGGGG CCGATAACTT AGTCAAGATA
CTGGAACGTT ACCAGGCTCA ATACGGCGAC CGATTTGAGC CATGTCCACG TCTTAAGGAG
ATGGCGGCAG AAAAGACACG TTTCTTCTAA
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| Protein sequence | MEKTFNLTRR EDGIAILTMD VPGETMNTLK AEFGPEISEI LSEIKRDSSI RGLVLISGKK
DSFVAGADIS MLDACQTAGD AKALSQQGHV VFNELEALNI PVVAAIHGAC LGGGLELALA
CHQRVCSDDG KTMLGVPEVQ LGLLPGGGGT QRLPRLVGIT TALDMMLTGK QIRPKQALKM
GLVNDVVPQT ILLQTAVEMA LAGKRTAKPV KKSLVNQLLE GTGFGRNIIF DQAAKQVAKK
TQGNYPAPAK IIDCVRQGMA KGMQKGLEVE ASHFAELVVS KESEALRSIF FATTEMKKET
GAEGATPRKV KKAVILGGGL MGGGIASVTT TKAKIPARVK DINEKGLSNA LSYAYKLLDK
GVKRRHMTPA VRDNLMALMT TTTEYKGVKD ADIVVEAVFE DLALKHQMVK DIERECGEHT
IFASNTSSLP IGQIAQAASR PENVIGLHYF SPVEKMPLVE VIAHAKTSPE TIATTVAFAR
KQGKTPIVVQ DGAGFYVNRI LALYMNEAAQ LLLEGQSIEH LDKALVKFGF PVGPITLLDE
VGIDVGAKIA PILEKELGER FKAPAAFDKL LSDDRKGRKN GKGFYQYAAG NKAPSKKKAV
DESVYGVLGI KPGIDKEMSA VAERCVVQML NEAVRCLDDG IIASPRDGDI GAIFGIGFPP
FLGGPFHYID TLGADNLVKI LERYQAQYGD RFEPCPRLKE MAAEKTRFF
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