Gene Shewmr4_1383 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1383 
SymbolyajC 
ID4251402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1610676 
End bp1611008 
Gene Length333 bp 
Protein Length110 aa 
Translation table11 
GC content43% 
IMG OID638117982 
Productpreprotein translocase subunit YajC 
Protein accessionYP_733518 
Protein GI113969725 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1862] Preprotein translocase subunit YajC 
TIGRFAM ID[TIGR00739] preprotein translocase, YajC subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.13492e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.20992e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTCATTT CAAATGCATA TGCAAATGCT GCAGGCGCTC CACAGGGTGG CGGCACCATG 
GAATTGATTT TCATGCTGGT GATTTTCGGT CTGATTTTCT ATTTCATGAT TTTCCGTCCG
CAATCTAAGC GTGTTAAAGA GCACAAGAAC CTGATGTCAT CTTTAACCAA GGGCGACGAA
GTCCTGACCA GCGGCGGTAT CTTAGGTAAG ATTGCAAAGA TCAGCGATGA AAATGACTAC
GTGTTACTGA GCTTGAACGA CACTACTCAA ATTACAATTA AAAAAGATTA CATTGCAGCT
GTATTGCCTA AGGGCTCTAT CCAGTCGTTG TAA
 
Protein sequence
MFISNAYANA AGAPQGGGTM ELIFMLVIFG LIFYFMIFRP QSKRVKEHKN LMSSLTKGDE 
VLTSGGILGK IAKISDENDY VLLSLNDTTQ ITIKKDYIAA VLPKGSIQSL