Gene Shewmr4_1328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1328 
Symbol 
ID4251348 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1538822 
End bp1540240 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content44% 
IMG OID638117913 
Productmannose-1-phosphate guanylyltransferase (GDP) 
Protein accessionYP_733464 
Protein GI113969671 
COG category[M] Cell wall/membrane/envelope biogenesis
[G] Carbohydrate transport and metabolism 
COG ID[COG0662] Mannose-6-phosphate isomerase
[COG0836] Mannose-1-phosphate guanylyltransferase 
TIGRFAM ID[TIGR01479] mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.358027 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000505656 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAAATA TTTTACCTGT TATTATGGCA GGAGGCTCCG GCACTCGTTT ATGGCCGCTT 
TCACGTGGCA ATTTTCCTAA ACAGTTTTTA TCGCTTTCTG GCAACGCCAC TATGCTGCAA
AACACCATCA GCCGCTTAAA TGGTATTGAG CATGCACCTG CGATGTTGAT TTGTAATGAA
GAGCATCGCT TTATCGCGGC AGAGCAGGTA AGGCTGTTAG GTGTTAAACA TAACGGTATT
TTGTTAGAGC CTGTTGGCCG TAATACCGCG CCTGCAATTG CTTTAGCGGC CTTTAAAGCG
GTTGAGTTAG GACAAGACCC CTTATTATTG GTGTTAGCGG CTGACCATGT GATAGAAGAT
GTTGCTGCAT TTCAACAGTC GGTTAGCAAG GCCGCTGAGT TAGCTGCTAC GGGTAAGCTA
GTCACTTTTG GTATTGTGGG TGATAAACCT GAAACGGGTT ACGGTTATAT TAAGCGTGGC
GATGCTTGTC AGCATGGTTA TGTTGTTGAT TGCTTTGTTG AAAAACCTAA CTTAGCCACT
GCTGAAGTGT ATGTCTCAAG CGGTGATTAT TACTGGAATA GTGGCATGTT TTTGTTTAAA
GCCAGCCGTT ATCTTGACGA ATTAAGAGTT TATCGCCCCG ATATCTACGC TGCCTGTGAG
CTTGCTATGC AAGTGCAAAA TAATGACAGC GATTTTATTC GCATTGATAA AGCTGCCTTT
GAAGCTTGCC CAGATGATTC TATCGACTAT GCGGTGATGG AGCAGACTAA AGATGCTGTG
GTAGTGCCAA TGGATGCAGG TTGGAGCGAT GTAGGCGGTT TTGCGGCTTT ATGGGAAGTC
TCAGGTAAAG ATGCCGATGG TAATGTGTTC AATGGCGATG TTAAAGCTGT TGATACTAAA
AACACTTTAG TATTTGGTGG CAATAAACTT ATCACCACTG TGGGTGTTGA GGACTTGGTA
ATTGTTAATA CTAAGGATGC GGTATTAGTT GCCCATAAAG ATCAATCACA ACATGTAAAA
GCGATTGTCG GCCAGCTTAA AGCGGAGCAG CGTAGCGAGG TGACTTTCCA TCGTGAGGTA
TATCGCCCCT GGGGTAAGTA TGACTCTATC GATAATGGCG ATCGTTTTCA GGTTAAGCGT
ATTACCGTAA AACCAGGCGC TAAGTTATCG GTACAAATGC ACCATCACCG TGCGGAGCAT
TGGATTGTTG TTTCTGGTAC GGCGAAAGTG ACTAACGGTG ATAAGGATAT TCTGTTAACA
GAAAATCAAT CAACTTATAT ACCTGTAGGT GTCATTCATG CGCTAGAAAA TCCAGGTAAA
GTTGATCTTG AGCTGATTGA AGTGCAATCC GGTTCGTACC TCGGTGAAGA TGATATTGTT
CGTTTTGAAG ATAGATACGG ACGAGTAGAA GGGAAGTAG
 
Protein sequence
MKNILPVIMA GGSGTRLWPL SRGNFPKQFL SLSGNATMLQ NTISRLNGIE HAPAMLICNE 
EHRFIAAEQV RLLGVKHNGI LLEPVGRNTA PAIALAAFKA VELGQDPLLL VLAADHVIED
VAAFQQSVSK AAELAATGKL VTFGIVGDKP ETGYGYIKRG DACQHGYVVD CFVEKPNLAT
AEVYVSSGDY YWNSGMFLFK ASRYLDELRV YRPDIYAACE LAMQVQNNDS DFIRIDKAAF
EACPDDSIDY AVMEQTKDAV VVPMDAGWSD VGGFAALWEV SGKDADGNVF NGDVKAVDTK
NTLVFGGNKL ITTVGVEDLV IVNTKDAVLV AHKDQSQHVK AIVGQLKAEQ RSEVTFHREV
YRPWGKYDSI DNGDRFQVKR ITVKPGAKLS VQMHHHRAEH WIVVSGTAKV TNGDKDILLT
ENQSTYIPVG VIHALENPGK VDLELIEVQS GSYLGEDDIV RFEDRYGRVE GK