| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1315 |
|---|
| Symbol | |
|---|
| ID | 4251335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1523323 |
|---|
| End bp | 1525836 |
|---|
| Gene Length | 2514 bp |
|---|
| Protein Length | 837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638117900 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_733451 |
|---|
| Protein GI | 113969658 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0893778 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTACAAC AATTCAAAAA ATACATCAAA GCGGTTCCCA AAACCGCAAT ATTAGTTGGC
ATCACTGCCA CGATATTGAT GGGCACACAG GCGCAAGCTA TTACGCCCTC TCCGCAGATG
ATAGAGCAAT TCAAACAACT ACCTAAGTCA GAGCAAGAAC GTTTAGCTCG CCAATACGGT
ATTGATCCGT CAATGATCAC GGGGGCCTCA ACTACTGCTA CTGCTGTTGA AAACCCAACT
GTAGTTACGC CACGAACGGA AACTGGTAAT AACGTCATCG ATCAATCTGA GGACGATAAA
CTTAACCAGG CAACCAAAAC GGAAGCTAAG GTTGAAGCGA TTGAAAGCAA AAAAGAAGAT
CAGCTAAAAC GCTTTGGCTA TGACTTATTT GCTGGTTCTC CAAGTACGTT TGCTCCCGTT
TCTGATGTAC CAGTGCCTGC TGAATACATG ATGGGCCCCG GTGATACCTT AAATGTGCAG
TTTTTTGGTA AAGAAAATAA TCAGTTCACA TTAACCGTCG GCCGTGATGG CGCGGTTCAA
TTTCCTAACT TGGGGCCTAT TTCACTAGTA GGCTTAACCT TTGCTGAAAC ACGCGAGTTA
TTACAGCAAA AGATCAGCCA AAGCATGATA GGTATTGAGT CCAATATCAC TATGGGTGAG
TTGCGTTCAA TCCGGATTTT TGTTGCCGGT GACGCTTACA AGCCAGGCTC CTATACTGTA
TCGAGTTTAT CCACTATTAC CCAAGCCTTG TTTATCTCGG GTGGTGTGAA CGAAATTGGT
AGCTTGCGGG ATATCCAATT AAAGCGCTCT GGTAAAACTA TTGGCCGTTT AGACTTGTAT
GATTTATTGC TTCGTGGCGA TGCTTCGGGT GATATGCGAT TACAATCCGG TGATGTGGTC
TTTGTTCCAT CTACAGGGGG CACTGTGAGT GTCATTGGCG AAGTGCGTCG CCCTGCCATT
TACGAGCTTA AAAATAACGA AACCATGGCC GATGTGATTA ATATGGCCAG TGGCTTAAAC
CCAGGTGCTT ATCCTAAAGC CAGTACCATC GAACGTTATA GTCGTGAAGC GGTAAAAACC
GTAGTAAGCG TAGATTTAAC CGAAAACTCA GGCTTAAGTA CGTTAGCTAA AAATGGCGAC
TTGCTTAATG TGCGCTCAGC TTCAAGCCGT ATTGATAATG CTATTACGGT CTCTGGTGCA
GTAATCCGCC CTGGTAAATA TCAATGGACA AATGGTTTAA CGGTTGCCGA TTTATTGCCT
TCTATTTGGG GGGATTTAAC CATCTCGGCA GACTTGGATT ACAGCTTGTT GGTAAGAGAA
ATCAACCAAC GTGGCGATAT CGAAGTCGAG CGTATTAACC TCGGGCGCGC AATTGGTGAA
CCAAAATCAC ATTATAATCT TGCGCTAAAG CCACGTGATT CAGTCATCGT ATTTGACTAT
GCCGATCGTG AGGAGCTGCT TAAGCCCATT ATTAAAAAGT TAAAAGAGCA AAGCCGTTTT
GGTGATGCAG CGAAGCTAGT TAATATCAAT GGTAATGTGC GTTTTCCTGG CCAGTATCCA
ATAACGGTTA ATGCCGATGT TAAAGATTTA CTCATTGCTG CAGGCGGGCT AGAAGAAGGT
GCATATACCT TATCTGCAGA GCTGACTCGC CAACAAGTGT CTGAGCAAAA CGGTGTCACA
GTAGAACATG TGCAACTTAG TTTAGACCGC GTTATGCAAA ATGATCCGGC GGCCAATATC
AAACTGCAAA GCCGTGACAT CTTAACCGTA CGTACGTTGC CAGACTGGCA AGAAACTCGC
TGGGTCACCA TTAAAGGTGA AGTCAAATTC CCCGGTACTT ACAGTATCCA GCGCGGCGAA
ACCTTAAAAC AAGTGCTTGC TCGTGCAGGG GGGATGACGA GTGATGCTGC ACCACGCAGT
GCAGTCTTTT TGCGCAAATC TATTCAAGAG AAAGAACAGC AAGAGCTTGC TAAGCTTGCC
GATGAATTGC GCCGCGAGAT TGCCGCAAAG GCCTTGACCA AAGACACGCC TACCGTTGGT
TATAACGACG CACAAATGAT GTTAAATCAG TTGGAAAACG TTAAAACGGT TGGTCGTTTG
GTTGTCGATA TCAATGCGAT TGAATTAGGC ATCGAAAGTG CCGATTTAAT GCTAGAAGAT
GCAGATGCAC TCTACATTCC GCCTGCTAAC CAAACGGTAT CTGTTATGGG CCAGGTGCAA
CATCCAAGCA CTCATCGCTT TAAATCAGGT TTAACCTATG AACAGTATCT AGCGTTATCC
GGTGGGGCAC GTAAACGCGC TGACGAATCA CGCACTTATA TATTAAAAGC CGATGGTTCG
GTACAAATGC CTGAGTCTTC ATTATGGTTT ACTGGCGGCA GCTCAATGGA ACCTGGTGAC
ACCATCGTTG TACCATTAGA TACCGAATAC AAAGATAATC TAACGTTGTG GACTCAAGTA
ACGAGCATTA TCTACAACAC CGCCGTCGCA GTATCCGCAA TATCGGGGAT ATAG
|
|---|
| Protein sequence | MLQQFKKYIK AVPKTAILVG ITATILMGTQ AQAITPSPQM IEQFKQLPKS EQERLARQYG
IDPSMITGAS TTATAVENPT VVTPRTETGN NVIDQSEDDK LNQATKTEAK VEAIESKKED
QLKRFGYDLF AGSPSTFAPV SDVPVPAEYM MGPGDTLNVQ FFGKENNQFT LTVGRDGAVQ
FPNLGPISLV GLTFAETREL LQQKISQSMI GIESNITMGE LRSIRIFVAG DAYKPGSYTV
SSLSTITQAL FISGGVNEIG SLRDIQLKRS GKTIGRLDLY DLLLRGDASG DMRLQSGDVV
FVPSTGGTVS VIGEVRRPAI YELKNNETMA DVINMASGLN PGAYPKASTI ERYSREAVKT
VVSVDLTENS GLSTLAKNGD LLNVRSASSR IDNAITVSGA VIRPGKYQWT NGLTVADLLP
SIWGDLTISA DLDYSLLVRE INQRGDIEVE RINLGRAIGE PKSHYNLALK PRDSVIVFDY
ADREELLKPI IKKLKEQSRF GDAAKLVNIN GNVRFPGQYP ITVNADVKDL LIAAGGLEEG
AYTLSAELTR QQVSEQNGVT VEHVQLSLDR VMQNDPAANI KLQSRDILTV RTLPDWQETR
WVTIKGEVKF PGTYSIQRGE TLKQVLARAG GMTSDAAPRS AVFLRKSIQE KEQQELAKLA
DELRREIAAK ALTKDTPTVG YNDAQMMLNQ LENVKTVGRL VVDINAIELG IESADLMLED
ADALYIPPAN QTVSVMGQVQ HPSTHRFKSG LTYEQYLALS GGARKRADES RTYILKADGS
VQMPESSLWF TGGSSMEPGD TIVVPLDTEY KDNLTLWTQV TSIIYNTAVA VSAISGI
|
|---|
| |