Gene Shewmr4_1240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1240 
Symbol 
ID4251296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1448299 
End bp1449438 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content47% 
IMG OID638117825 
Productcytochrome d ubiquinol oxidase, subunit II 
Protein accessionYP_733377 
Protein GI113969584 
COG category[C] Energy production and conversion 
COG ID[COG1294] Cytochrome bd-type quinol oxidase, subunit 2 
TIGRFAM ID[TIGR00203] cytochrome d oxidase, subunit II (cydB) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.256335 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGATT ATGAAATATT GAGAGTTATC TGGTGGGCTC TGATCGGCGT ACTGTTCATC 
GGATTTGCGG TCACTGACGG TTTTGACATG GGCGTGGGTG CACTTTTACC GATTATCGGT
AAAGACGATA CTGAGCGCCG TATTATGGTC AACACCATTG CTCCCCATTG GGACGGTAAC
CAAGTATGGT TAATCACCGC AGGTGGTGCC TTGTTTGCGG CATGGCCTAT GGTGTATGCA
GTGTCTTTCT CTGGCTTCTA TGTGGCCATG ATGTTAGTGC TGTTTGCCTT GTACACTCGT
CCTGTCGGAT TTGACTATCG CTCTAAGATT GAAAATCCAA AATGGCGTAA GTCGTGGGAC
TGGGCATTGT TCTGTGGTGG CTTTATTCCA CCGCTGATCA TCGGTGTGGC CTTCGGTAAC
TTACTCCAAG GTGTACCATT CAATTTCGAT GAGTTCCTGC GTGCGACTTA TCACGGTGGT
TTATTTGGCC TGTTGAACCC ATTCGGTTTA CTGGCGGGCT TAGTGAGCGT GAGCATGTTT
ATGATGCAAG GCGCTGCTTG GTTACAAATG AAGACCGACG GTGAGCTGCG TGTACGTGCC
GCGAATGCGA CTCAGCTATG TGCACTGTTA GTGGCAGTAT TATTTGCCGC TGCGGGTGTG
TGGTTAGCCA ATGGTATTGA TGGTTATGTT ATCACTTCAA CCCTTGACCA CCATGCACTG
TCTAACCCAA CGCTGAAAAC CGTTGCGGTT GAATCTGGCG CTTGGTTAGC CAACTACGAT
AAGTATCCTA TTACTATGCT GTTCCCAGTA TTAGGTGTGG CATTACCACT GCTGGTTATC
CTAGTGAGCC GCTTAAATCG TTCAGGTTTT GCGTTCTTAT TTAGCTCGCT GACAGTGGCT
ATGGTGATCT TAACTTGTGG TGCAGCAATG TTCCCATTCG TTATGCCATC TTCATTAGAT
CCTAACGTGA GCTTAACCAT GTGGGATGCG ACTGCGAGTG AAATGACATT AACTGTGATG
ACTTGGGCGG CGATTATCTT CGTTCCAATC GTGTTAAGTT ACACTGTATG GACTTACTTC
AAGATGTTTG GCCGCTTAAA CCGCAAACAT ATTGAAGATA ACAAAGCCTC ACTCTATTAG
 
Protein sequence
MFDYEILRVI WWALIGVLFI GFAVTDGFDM GVGALLPIIG KDDTERRIMV NTIAPHWDGN 
QVWLITAGGA LFAAWPMVYA VSFSGFYVAM MLVLFALYTR PVGFDYRSKI ENPKWRKSWD
WALFCGGFIP PLIIGVAFGN LLQGVPFNFD EFLRATYHGG LFGLLNPFGL LAGLVSVSMF
MMQGAAWLQM KTDGELRVRA ANATQLCALL VAVLFAAAGV WLANGIDGYV ITSTLDHHAL
SNPTLKTVAV ESGAWLANYD KYPITMLFPV LGVALPLLVI LVSRLNRSGF AFLFSSLTVA
MVILTCGAAM FPFVMPSSLD PNVSLTMWDA TASEMTLTVM TWAAIIFVPI VLSYTVWTYF
KMFGRLNRKH IEDNKASLY