| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1233 |
|---|
| Symbol | xseA |
|---|
| ID | 4251289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1433953 |
|---|
| End bp | 1435299 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638117818 |
|---|
| Product | exodeoxyribonuclease VII large subunit |
|---|
| Protein accession | YP_733370 |
|---|
| Protein GI | 113969577 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1570] Exonuclease VII, large subunit |
|---|
| TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCC CTAAAAATAA TATTTATACC GTCTCACGCC TTAATGGTGA AGTCAGGCAA
ATTCTCGAGG GACAACTGGG AAAAGTCTGG CTAAACGGTG AAATTTCCAA CTTTTCGGCC
CCCAGTTCGG GACATTGGTA TTTAACCCTT AAGGATCATT ATTCCCAAAT TCGCTGCGCC
ATGTTCAAGG GGCGCAACCA AAGCGTGAGC TTTAAACCTG TGAATGGTCA GCAGGTGCTA
GTAAAAGGCG CCATCAGCGT GTACGAGCCT AGGGGCGACT ATCAATTATT GATTGAATCT
ATGCTCCCCG CAGGGGATGG CTTACTGGCA CAGCAATTTG AAGCGCTCAA AATGAAGCTC
GCGGCGCAGG GATTATTTGC CGCCGACACT AAACGTCAGT TACCGAAAAA TATTCAACGT
ATTGGGGTCA TCACCTCCCC CTCGGGCGCG GCTATCCGTG ATGTGTTGCA TGTGCTTGCC
CGCCGTGACC CTTCCATCGA AGTGATTATT TATCCCACTC AGGTACAAGG CGAGAGCGCG
GATCTTAATA TCTGCCAAGC CATCAATATC GCCAACCAAC GGCTCGAGGT CGATGTATTA
CTGCTCACCC GCGGCGGCGG CTCACTCGAA GATTTATGGT GTTTTAATAG TGAAGCGCTC
GCCCATACCA TTTACAACAG TGCCCTACCC GTTGTCAGCG CCGTAGGCCA TGAAGTCGAC
ACCACTATCA GTGACTATGT GGCCGACGTT CGCGCCCCGA CGCCCTCTGC GGGCGCAGAG
CTACTGTCTC AGGATAGCGA CAATAAGAGC CAACGCTTAG CCACAGTACT GTCGCGCCTC
AAACAGAGCG CGAGTCACTA TCAACTCAAG CAAGAAAGAC GCTTAAGTTT GCTCGAACAC
AGACTGCAAC GCTTAGATCC TAAGCGCACC TTGCAACAAT TTGAGCAGCG TTTCGATGAA
ATGCAATTAC GGCTCGAAGC CGCATTGTCT AACAAATTGC ACGGCTTAAG TCGCCGTCAG
CAGCAACTGG CAAGCCGCCT CGAGCAGCAG TCCCCAAAGC ACAAACTCGC ACTCGAGACC
AATCGATTGA GCTATTTAGC GACGCGTTTG CAGGACGCTA TGCAGGATAC CCTCAACCAA
AGCGAGCAGC GGGTCAAATA TGCCGCCCAT CAATTGGAAA CGGTCAGTCC ATTAGCCACC
TTGAGCCGGG GTTACAGCAT CACCACAGAT GCAAATCATC AAGTCATAGA CAATGCCGCC
CAGCTGAGTG TGGGCGATAA GATAAACACT CGCCTACGCC ATGGACAAGT GCAGTCGACC
GTGACGCAAA TAACCGATGA GAGCTAA
|
|---|
| Protein sequence | MQVPKNNIYT VSRLNGEVRQ ILEGQLGKVW LNGEISNFSA PSSGHWYLTL KDHYSQIRCA
MFKGRNQSVS FKPVNGQQVL VKGAISVYEP RGDYQLLIES MLPAGDGLLA QQFEALKMKL
AAQGLFAADT KRQLPKNIQR IGVITSPSGA AIRDVLHVLA RRDPSIEVII YPTQVQGESA
DLNICQAINI ANQRLEVDVL LLTRGGGSLE DLWCFNSEAL AHTIYNSALP VVSAVGHEVD
TTISDYVADV RAPTPSAGAE LLSQDSDNKS QRLATVLSRL KQSASHYQLK QERRLSLLEH
RLQRLDPKRT LQQFEQRFDE MQLRLEAALS NKLHGLSRRQ QQLASRLEQQ SPKHKLALET
NRLSYLATRL QDAMQDTLNQ SEQRVKYAAH QLETVSPLAT LSRGYSITTD ANHQVIDNAA
QLSVGDKINT RLRHGQVQST VTQITDES
|
|---|
| |