Gene Shewmr4_1187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1187 
Symbol 
ID4251471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1391888 
End bp1393045 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content48% 
IMG OID638117772 
Productputative oxygen-independent coproporphyrinogen III oxidase 
Protein accessionYP_733324 
Protein GI113969531 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.454386 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGTGA ATGTGTCACC TCAGTTAACC CTGCCGCCGT TGAGCTTGTA CATCCATATC 
CCTTGGTGTG TGCAAAAATG CCCTTACTGC GACTTTAACT CCCATGGACA AAATGGCGAA
TTACCCCAAA AGGCCTATGT GGATGCGCTG CTAGCGGACC TACGCCAAGA CTTGCACTTA
GTACAAGGCC GTAAGCTGCA CACTATTTTT ATTGGTGGTG GAACGCCGTC TCTGTTTGAT
GCCAATCAAA TCAAACGGAT ATTAGATGGT GCCAATGCAC TAATTCCCTT CAGTGACGAT
ATTGAAATCA CCATGGAGGC CAACCCAGGC ACCCTAGAGC ACGATGACTT TAGTGCCTAC
CGCGCCGCAG GGGTCACCCG GTTATCCATT GGAGTACAGA GTTTCTCTAA GGATAAGCTC
AATCTGCTGG GGCGGATCCA CGATCAAAAC GAAGCCCAAA CCGCCGCCCA AAAAGCCAGC
CAAGCGGGTT ATTTAAGTTT TAACTTGGAT TTGATGCACG GACTTCCGAA TCAAAGTTTT
GCAGAGGCCA TGGCGGATAT CGATACCGCA GCGGCGCTCA ATCCGCCGCA TTTGTCTTGG
TATCAACTGA CGATTGAGCC TAACACCCTG TTTCATTCAA AACCACCGCA ACTACCCGAC
GATGAAGATC TCTGGCAGAT CTACGAACAA GGGCAACAAA AGTTAGCGGC ACTCGGTTAT
GAGCAGTATG AAATCTCGGC CTATGCCAAA CCCGGCTATC AATGCAGGCA TAACCTTAAC
TATTGGCAGT TTGGCGATTA TTTAGGCATA GGCTGCGGTG CCCATGGCAA AGTGACCTTG
CCCGAAGAGA ACCGCATTAT TCGCACGGTT AAAATCAAAC ACCCTAAGGG TTATTTAGCT
GCCGACAAAT ATAACTTCGA GCAGACTGAG GTCGCCGAAG AAGATCGCGC CCTCGAATAC
TTGATGAATC GTCTGCGCTT AATGACGCCT ATTCCTAAGC AAGAGTTTGA AAACAGAACT
GGTTTACACC GAGATACCTT GAAAGAGGGA ATGGAAAAGG CCAAACAACG GGGTTTACTG
ACCGAATCGG CTGAACATTG GCAATTAACC AGTAAAGGTC ACATGTTTGT GAACGATTTA
CTGACACAAT TTTGTTAA
 
Protein sequence
MSVNVSPQLT LPPLSLYIHI PWCVQKCPYC DFNSHGQNGE LPQKAYVDAL LADLRQDLHL 
VQGRKLHTIF IGGGTPSLFD ANQIKRILDG ANALIPFSDD IEITMEANPG TLEHDDFSAY
RAAGVTRLSI GVQSFSKDKL NLLGRIHDQN EAQTAAQKAS QAGYLSFNLD LMHGLPNQSF
AEAMADIDTA AALNPPHLSW YQLTIEPNTL FHSKPPQLPD DEDLWQIYEQ GQQKLAALGY
EQYEISAYAK PGYQCRHNLN YWQFGDYLGI GCGAHGKVTL PEENRIIRTV KIKHPKGYLA
ADKYNFEQTE VAEEDRALEY LMNRLRLMTP IPKQEFENRT GLHRDTLKEG MEKAKQRGLL
TESAEHWQLT SKGHMFVNDL LTQFC