Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1187 |
Symbol | |
ID | 4251471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1391888 |
End bp | 1393045 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638117772 |
Product | putative oxygen-independent coproporphyrinogen III oxidase |
Protein accession | YP_733324 |
Protein GI | 113969531 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.454386 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGTGA ATGTGTCACC TCAGTTAACC CTGCCGCCGT TGAGCTTGTA CATCCATATC CCTTGGTGTG TGCAAAAATG CCCTTACTGC GACTTTAACT CCCATGGACA AAATGGCGAA TTACCCCAAA AGGCCTATGT GGATGCGCTG CTAGCGGACC TACGCCAAGA CTTGCACTTA GTACAAGGCC GTAAGCTGCA CACTATTTTT ATTGGTGGTG GAACGCCGTC TCTGTTTGAT GCCAATCAAA TCAAACGGAT ATTAGATGGT GCCAATGCAC TAATTCCCTT CAGTGACGAT ATTGAAATCA CCATGGAGGC CAACCCAGGC ACCCTAGAGC ACGATGACTT TAGTGCCTAC CGCGCCGCAG GGGTCACCCG GTTATCCATT GGAGTACAGA GTTTCTCTAA GGATAAGCTC AATCTGCTGG GGCGGATCCA CGATCAAAAC GAAGCCCAAA CCGCCGCCCA AAAAGCCAGC CAAGCGGGTT ATTTAAGTTT TAACTTGGAT TTGATGCACG GACTTCCGAA TCAAAGTTTT GCAGAGGCCA TGGCGGATAT CGATACCGCA GCGGCGCTCA ATCCGCCGCA TTTGTCTTGG TATCAACTGA CGATTGAGCC TAACACCCTG TTTCATTCAA AACCACCGCA ACTACCCGAC GATGAAGATC TCTGGCAGAT CTACGAACAA GGGCAACAAA AGTTAGCGGC ACTCGGTTAT GAGCAGTATG AAATCTCGGC CTATGCCAAA CCCGGCTATC AATGCAGGCA TAACCTTAAC TATTGGCAGT TTGGCGATTA TTTAGGCATA GGCTGCGGTG CCCATGGCAA AGTGACCTTG CCCGAAGAGA ACCGCATTAT TCGCACGGTT AAAATCAAAC ACCCTAAGGG TTATTTAGCT GCCGACAAAT ATAACTTCGA GCAGACTGAG GTCGCCGAAG AAGATCGCGC CCTCGAATAC TTGATGAATC GTCTGCGCTT AATGACGCCT ATTCCTAAGC AAGAGTTTGA AAACAGAACT GGTTTACACC GAGATACCTT GAAAGAGGGA ATGGAAAAGG CCAAACAACG GGGTTTACTG ACCGAATCGG CTGAACATTG GCAATTAACC AGTAAAGGTC ACATGTTTGT GAACGATTTA CTGACACAAT TTTGTTAA
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Protein sequence | MSVNVSPQLT LPPLSLYIHI PWCVQKCPYC DFNSHGQNGE LPQKAYVDAL LADLRQDLHL VQGRKLHTIF IGGGTPSLFD ANQIKRILDG ANALIPFSDD IEITMEANPG TLEHDDFSAY RAAGVTRLSI GVQSFSKDKL NLLGRIHDQN EAQTAAQKAS QAGYLSFNLD LMHGLPNQSF AEAMADIDTA AALNPPHLSW YQLTIEPNTL FHSKPPQLPD DEDLWQIYEQ GQQKLAALGY EQYEISAYAK PGYQCRHNLN YWQFGDYLGI GCGAHGKVTL PEENRIIRTV KIKHPKGYLA ADKYNFEQTE VAEEDRALEY LMNRLRLMTP IPKQEFENRT GLHRDTLKEG MEKAKQRGLL TESAEHWQLT SKGHMFVNDL LTQFC
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