| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1117 |
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| Symbol | ispD |
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| ID | 4251085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1312224 |
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| End bp | 1312973 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 638117690 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_733254 |
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| Protein GI | 113969461 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0133813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.923031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACCG TATTAGAAGC CGCGCCGCAG GTCGAAACCC AAGTTGCAGT TCAAATTGAT
CCTTTCTCGC ACCATGTGGT CGCGATTGTG CCCGCCGCGG GGATTGGCAG CCGCATGGGC
GCGGGCAAAC CCAAGCAATA TTTAACCTTG CTGGGGCAAA GCATTCTGGC CCATACCTTA
GACAAGTTAT TGTCCCATCC TCAAATTAAC CAAGTGATTG TGGCACTGCA TCCAGAGGAT
ACCGAGTTTG CTGCGTTATC GCAGGCCAAG CATCCCAAGC TGGTGACTGT CATTGGCGGC
TCTGAGCGCG CCGACTCGGT GCTGGCGGCA CTCGATAAGG CGCCTGATAA TGGTTGGGCC
TTAGTACACG ATGCGGCCAG ACCCTGCCTG ACGGCGCAAG ACATAGATAA ATTGCTGGCA
TCGCGGGTGC ACTTTCCCCA AGGGGCGATT TTGGCCATGC CTGTACGGGA TACCATGAAG
CGCGCCAATA GCTTAGGTGA AATTAGCTCG ACCGTTTGCC GCGATAATCT CTGGCATGCG
TTGACGCCGC AGTTATTTCC AACCTCCTTG TTGCGATTAC ATTTAAAAGC CGCGCTTGCC
GCGGGTGCTG TCGTGACCGA TGAGGCCTCG GCGATGGAGT GGGCGGGTAT TTCCCCTGGT
TTGGTCGCTG GGCGGGCGGA TAACATTAAA GTGACCCATC CCGATGATTT GGAGTTGGCA
GAGCTCTTTT TACTGCGCGC AAATGCTTGA
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| Protein sequence | MDTVLEAAPQ VETQVAVQID PFSHHVVAIV PAAGIGSRMG AGKPKQYLTL LGQSILAHTL
DKLLSHPQIN QVIVALHPED TEFAALSQAK HPKLVTVIGG SERADSVLAA LDKAPDNGWA
LVHDAARPCL TAQDIDKLLA SRVHFPQGAI LAMPVRDTMK RANSLGEISS TVCRDNLWHA
LTPQLFPTSL LRLHLKAALA AGAVVTDEAS AMEWAGISPG LVAGRADNIK VTHPDDLELA
ELFLLRANA
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