Gene Shewmr4_1100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1100 
SymbolnusB 
ID4251068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1291288 
End bp1291692 
Gene Length405 bp 
Protein Length134 aa 
Translation table11 
GC content47% 
IMG OID638117673 
Producttranscription antitermination protein NusB 
Protein accessionYP_733237 
Protein GI113969444 
COG category[K] Transcription 
COG ID[COG0781] Transcription termination factor 
TIGRFAM ID[TIGR01951] transcription antitermination factor NusB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.96608e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.728168 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCCTT CTGAGCGCCG CAAGGCCCGC CGTTTAGCCG TACAAGCCAT CTATTCATGG 
CAACTAAGCG GGAATAATAT TGCCGATGTC GAGCATGAGT TTTTAACTGA ACAGAGTCTC
GATGGTGTAG ACGTAGCTTA TTTTCGTGAG CTATTTGCAG GCGTAGCAAC TAAGAAAACC
CAACTGGATG AGTTGTTCAT TCCACACTTG GACCGCCCCA TTGATGAGGT GTCGCCAGTG
GAGAAGGCCA TAGTTCGCTT AGCTGCCTAT GAGCTGACTT TCCGTAAAGA TGTGCCATTT
AAAGTCGCGA TTAACGAGGC GATTGAACTG GCTAAAGCTT TCGGTGCGGA TGAAAGCCAT
AAGTTTGTTA ATGGATTACT CGACAAACTG GTTGCACGTA AGTAA
 
Protein sequence
MKPSERRKAR RLAVQAIYSW QLSGNNIADV EHEFLTEQSL DGVDVAYFRE LFAGVATKKT 
QLDELFIPHL DRPIDEVSPV EKAIVRLAAY ELTFRKDVPF KVAINEAIEL AKAFGADESH
KFVNGLLDKL VARK