Gene Shewmr4_1070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1070 
Symbol 
ID4250775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1252518 
End bp1253336 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content50% 
IMG OID638117643 
Productextracellular solute-binding protein 
Protein accessionYP_733207 
Protein GI113969414 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.62274e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGTTT GCAGCCCAAC AAGGAATGAA TTTCAGCGAG TAATAAATAA CCCGCTGACG 
TTGTTGACTG CGGCTTGCCT ATTTTTATTC TCTGCCACAA CCCACTCCTC CTTTGCCCAA
GAAAGCCAAA GTAACCCACA AGCCGTAGGA CATAGCATCA CCTTAGCCGC CGAAGACAGC
TGGCCGCCGT TCGCCAATCA GTTTGGCCAA GGGATCTCCC ATCGCCTTAT CGCGGCGGCA
TTCAAGCAAT CTCAAGTGGA AGTCAACAGC CTAGTCGTGC CCTATAGCCG CGCCCTTATG
ATGGCCGAAA AAGGTGCCGT CGATGGAGTC TTTAACGTGA CCCGCGAAGC GAGTACTGAG
CAACGTTTTG TGTTTGGTAA CACGCCGCTA TTTGTGGCGA AAGCCTCTTT TTATCAACGC
AAACAACGCC CGCTCATCGC CGCCAATAAA TGGGAAATTC CCAAAGGCAG CATAGTCGGG
GTCATAAAAA GTTATGAGTA TGGCGATGAG TTTCCCGAAC TGGTGAAACA GCGCCAACTG
AATGTCATCA CGGTCGCCAA CCAACAGCAA CTGATTAATC TGTTGATGAT TGGCCGAATC
GATGCGGCGG TCATGTTCGA CTTAGTCGCA CAGGAAAACC TGCAAAAAAT GGGCGTCAGT
GACGATGTGA TCCCCGCCTT TAATAACCAT AGCAGCGAGA TTTATCTGGC CTTTTCGAAG
GAAAACCCCA AAGCCGCACA ACTCGCTAAA GAGCTGGATC TGGGCTTAAC CCAGTTAAAA
GCCAATGGAC AGTATCAACA ACTGCTTAGC ACTAAGTAA
 
Protein sequence
MRVCSPTRNE FQRVINNPLT LLTAACLFLF SATTHSSFAQ ESQSNPQAVG HSITLAAEDS 
WPPFANQFGQ GISHRLIAAA FKQSQVEVNS LVVPYSRALM MAEKGAVDGV FNVTREASTE
QRFVFGNTPL FVAKASFYQR KQRPLIAANK WEIPKGSIVG VIKSYEYGDE FPELVKQRQL
NVITVANQQQ LINLLMIGRI DAAVMFDLVA QENLQKMGVS DDVIPAFNNH SSEIYLAFSK
ENPKAAQLAK ELDLGLTQLK ANGQYQQLLS TK