| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1028 |
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| Symbol | truB |
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| ID | 4251101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1197764 |
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| End bp | 1198717 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638117601 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_733165 |
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| Protein GI | 113969372 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000142961 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGAGAC GTTCGAAGGG TCGCTTTATC GACGGTATCG TGTTGTTGGA CAAGGCCACA
GGAATGAGCT CCAACTTTGC ACTACAACGA GTAAAGCGCT TTTTTAATGC CAACAAAGCA
GGGCATACGG GTGCACTCGA TCCACTGGCA ACTGGCATGC TGCCAATCTG TTTAGGTGAA
GCGACTAAGT TTTCGCAGCA TTTGCTGGAT TCGGATAAGC GTTATCTGGT CACAGCAAAA
CTGGGACAAC GTACAGATAC TAGCGACTCA GACGGTGAAG TCGTGCAGAC TCGCCCGATC
GAATTCACTG AGGCGCAGTT AATGTCCGCC TTAGAACATT TCCGTGGCGA TACCCTGCAA
GTGCCATCCA TGTATTCTGC GCTGAAATAC CAAGGCCAGC CCTTGTATAA GTATGCCCGC
GAGGGGATTG AAGTGCCCCG CGAGGCGCGT CCTATCACTG TCTTCGAGCT GAACTTCATC
AGTCTAGAAG GCGATGAGCT GACCCTAGAC ATTCATTGCT CTAAGGGCAC TTATATTCGC
ACTATCATCG ATGATTTAGG TGAGATGCTC GGTTGTGGCG CCCATGTAAT TATGCTGCGT
CGTACTCAAG TCGCGCATTA TCCCTACGAC AAAATGGTCA CCTTGGAGCA ACTCGAAGCC
TTAGTCGCTA AGGCGCAGGA AGAGCAGCTT GACCCTAGCA GCTTGCTGGA CTCGTTGTTG
TTGCCTATGG ATACCGCGGT TGCCGACTTT CCTGAAGTGA ATGTGCCTGA TGCGAGCGCA
GCTTACTTAA TGCAAGGTCA GGCGGTACGT GTCTCAGGAC TCGTTGCAGA TAAGTTGGTG
CGCATTACGT TGGGCACTGA GCGTCGTTTC GTCGGAATTG GCGAGATGAA CGAAGATGGT
TTACTGGCGC CTAAGCGCTT AGTCGTGATC CACGACCAAG CTAAAGCATC TTAA
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| Protein sequence | MARRSKGRFI DGIVLLDKAT GMSSNFALQR VKRFFNANKA GHTGALDPLA TGMLPICLGE
ATKFSQHLLD SDKRYLVTAK LGQRTDTSDS DGEVVQTRPI EFTEAQLMSA LEHFRGDTLQ
VPSMYSALKY QGQPLYKYAR EGIEVPREAR PITVFELNFI SLEGDELTLD IHCSKGTYIR
TIIDDLGEML GCGAHVIMLR RTQVAHYPYD KMVTLEQLEA LVAKAQEEQL DPSSLLDSLL
LPMDTAVADF PEVNVPDASA AYLMQGQAVR VSGLVADKLV RITLGTERRF VGIGEMNEDG
LLAPKRLVVI HDQAKAS
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