Gene Shewmr4_1022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_1022 
Symbol 
ID4251095 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1191051 
End bp1191833 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content48% 
IMG OID638117593 
Producttriosephosphate isomerase 
Protein accessionYP_733159 
Protein GI113969366 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0149] Triosephosphate isomerase 
TIGRFAM ID[TIGR00419] triosephosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.78614e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000431545 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCACTCA GACGTCCTAT GGTAGCTGGC AATTGGAAGA TGAACGGCAG CGCGGCATTA 
GCCCAAGAGT TGTTCAAGAA ATTTGCCTCA AAGCTCCAAA ATGATTCAGC TGAAGTGGTT
TTATGCCCGC CTTCTATCTA TCTAGAAAGC GTAAGGCAAC TGCTAGAAGC AAACAAGGAA
GCGTTAGACG GTTCACTTGT TAGGATGGGC GCTCAAAATT TAAGTCAACA TGACTTTGGC
GCTTATACCG GAGAAGTTTC GGGTCAGATG CTTAAAGATT GCGGATGTCG ATATGTGATT
ATCGGGCATT CAGAACGTCG CCGTATGTAC GGAGAGACGA GTAATATCGT AGCGGAGAAA
TTCGCCGCTG CACAAAAGCA CGGTTTAACC CCCATTTTAT GTGTGGGTGA GTCGGGTCCA
GCACGAGAAG CAAGACGTAC CTTCGAGGTG ATTGCGGAAG AGTTGGATAT AGTGATCCAG
AAAAATGGCA CTATGGCTTT TGATAACGCC ATTATCGCTT ACGAGCCGTT ATGGGCTGTA
GGAACTGGTA AGAGCGCGAC ACCAGAGCAG GCACAAGAAG TACATGCGTT TATTCGCAAG
CGTCTCTCTG AAGTGTCTCC GTTTATCGGA GAGAATATCA GGATCTTGTA CGGTGGTAGT
GTGACGCCGA GTAATGCGGC AGATTTATTC GCCCAACCTG ATGTTGATGG TGGACTGATT
GGCGGTGCCA GTTTAAACTC TAGCGAGTTT TTAAGTCTGT GTACCATAGC GATGAGCGCA
TAA
 
Protein sequence
MALRRPMVAG NWKMNGSAAL AQELFKKFAS KLQNDSAEVV LCPPSIYLES VRQLLEANKE 
ALDGSLVRMG AQNLSQHDFG AYTGEVSGQM LKDCGCRYVI IGHSERRRMY GETSNIVAEK
FAAAQKHGLT PILCVGESGP AREARRTFEV IAEELDIVIQ KNGTMAFDNA IIAYEPLWAV
GTGKSATPEQ AQEVHAFIRK RLSEVSPFIG ENIRILYGGS VTPSNAADLF AQPDVDGGLI
GGASLNSSEF LSLCTIAMSA