| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1016 |
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| Symbol | secF |
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| ID | 4251054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1184489 |
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| End bp | 1185373 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117587 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_733153 |
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| Protein GI | 113969360 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0271563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00537871 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAATC TCAATCTAAC TAAATGGCGT TATGTGTCGA GCGCTATCTC TCTCTTTTTA
ATGTTGGCCT CTCTCACCAT CATCGGGATG AAAGGCTTTA ACTGGGGCTT GGATTTTACA
GGTGGTGTGG TGACCGAGGT GCAGCTCGAC AGAAGGATCA CCAGTAGCGA GCTGCAACCG
CTATTGAACG CGGCTTATCA GCAAGAGGTG ACAGTGATTT CGGCCAGTGA GCCCGGACGC
TGGGTATTGC GCTATGCCGA TACGGCGCAA AGTAATGTCA ATATTCAAGA AACCTTAGCG
CCACTGGGTG AGGTGCAAGT ACTGAACACC AGTATTGTCG GCCCGCAAGT GGGTAAAGAG
TTAGCCGAGC AGGGCGGTCT TGCTTTGTTG GTGGCCATGC TGTGTATCTT AGGCTATTTG
AGTTATCGCT TCGAATGGCG TCTCGCCTCC GGTGCGTTGT TTGCACTGGT GCACGACGTG
ATTTTCGTGC TCGCCTTTTT CTCATTAACC CAAATGGAGT TTAATTTAAC CGTGCTCGCC
GCCGTGCTGG CGATTTTAGG CTATTCGCTC AATGATTCGA TCATTATTGC CGACCGGATC
CGGGAGTTAT TGATAGCCAA ACCAAAGCTT GCTATTCAAG AGATTAACAA CCAAGCGATT
GTCGCGACAT TTTCCCGTAC CATGGTAACC TCGGGCACCA CCTTAATGAC GGTGGGTGCG
TTATGGATTA TGGGCGGTGG GCCGCTGGAA GGATTCTCGA TAGCCATGTT TATCGGCATC
TTAACTGGCA CTTTCTCATC GATATCGGTC GGGACTTCAT TGCCCGAATT TTTGGGATTA
ACGCCAGAGC ATTATAAAGT GCAAGTCATC ACAGATACGC CATAA
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| Protein sequence | MKNLNLTKWR YVSSAISLFL MLASLTIIGM KGFNWGLDFT GGVVTEVQLD RRITSSELQP
LLNAAYQQEV TVISASEPGR WVLRYADTAQ SNVNIQETLA PLGEVQVLNT SIVGPQVGKE
LAEQGGLALL VAMLCILGYL SYRFEWRLAS GALFALVHDV IFVLAFFSLT QMEFNLTVLA
AVLAILGYSL NDSIIIADRI RELLIAKPKL AIQEINNQAI VATFSRTMVT SGTTLMTVGA
LWIMGGGPLE GFSIAMFIGI LTGTFSSISV GTSLPEFLGL TPEHYKVQVI TDTP
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