Gene Shewmr4_0992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0992 
Symbol 
ID4251030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1159669 
End bp1160139 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content54% 
IMG OID638117556 
ProductrRNA large subunit methyltransferase 
Protein accessionYP_733129 
Protein GI113969336 
COG category[S] Function unknown 
COG ID[COG1576] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000354968 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0933085 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTTGC AACTTATCGC AGTAGGGACA CGGATGCCCG ATTGGGTCAC CCGCGGCTTT 
GAAGAGTACC AACGCCGCTT CCCCCGAGAT ATGGCGCTGG AACTTATCGA AATCCCTGCC
GGCAAGCGCG GAAAAAACGC TGATATCGTT CGCATTCTGC AAAAGGAAGG CGAGCAAATG
TTAGCGGCAA TCCCTAAGGG CAACCATATT GTCACCTTAG ATCTTCCTGG CAAAAACTGG
ACTACGCCGG AATTGGCGAC CGCCATGAAC AAATGGCAAC TCGATGGTCG TGATGTGAGC
TTACTGGTTG GCGGCCCCGA AGGCTTAGCG CCCGCCTGTA AGGAAGCCGC CCATCAGAGT
TGGTGCCTAT CGGCATTGAC CCTGCCCCAT CCTTTGGTGC GGATTGTGGT TGCCGAAAGC
TTATACCGCG CGTGGAGCGT GAACACCAAT CACCCTTATC ACAGAGAATA A
 
Protein sequence
MKLQLIAVGT RMPDWVTRGF EEYQRRFPRD MALELIEIPA GKRGKNADIV RILQKEGEQM 
LAAIPKGNHI VTLDLPGKNW TTPELATAMN KWQLDGRDVS LLVGGPEGLA PACKEAAHQS
WCLSALTLPH PLVRIVVAES LYRAWSVNTN HPYHRE