Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0942 |
Symbol | |
ID | 4251873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1099909 |
End bp | 1101033 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638117505 |
Product | ApbE family lipoprotein |
Protein accession | YP_733079 |
Protein GI | 113969286 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.324541 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGAGTA AAGCTCTCAT CTGCAACTTT TGTATTAAAG GGCATCCAAA AGAGTTGTTA GTCACTATGT TTAAAACCCT AGCGTTAAAA ACCCCCGTGT TAAAAACCTC AGTGTTAAAG CATTCAGTGA ACTGGCTGGT CCTTGTAGGT CTAGCCTTTT TTATTTCAGC CTGTAGCAAA CAGGATGAGG TTATCTCCCT CGCGGGCAGC ACAATGGGCA CGACCTACCA CATTAAAGTG GTTCCCAATG AGCAAATGCC AACGGCCCAG CTGTTGCAGG CCGAAATTGA CTTAGCCCTA GAGCAAGTCA ATAACCAGAT GTCGACTTAT CGACCCAATT CAGAACTGTC TCGTTTCAAT CAGTTACCGC TCGAGCAAAG CGTTGAAGTG TCGCCGGATA CCATTAAAGT GGTTAAAGAA GGCATGCGTT TGTATAACGT GACGGACAAA GCCTTAGACA TTACCTTAGG GCCGCTGGTG AACCTATGGG GATTTGGCCC CGATAAACGC CCAACCAAAG TGCCAACTCA AGCCGATATC GATGCGGCTA AAGCCAAAAC GGGTATCAGT GAGCTTTCTA TCGAAGGCAA TCGCTTAAGC AAGCACAATG CGCATTTATA TGTGGACTTG TCTTCAATCG CCAAAGGTTT TGGCGTGGAC AAAGTGGCCT CGATTTTAGA TAAGTACCAT GCAAGCGGTT ACTTAGTCGA AATTGGTGGC GAGCTGAGCA TTAAAGGCAC TAAAGGCGAT GGTAGCTCAT GGCGCGTCGC GATAGAGAAA CCGACCGATG ATGGCATGGC GGTGCAACAG GTGATTGAGC CTGGCACTAT GGCGATGGCA ACGTCGGGGG ATTATCGCAA TTATTATGAG GAAGAAGGTC AGCGTTTTAC TCATATAATT GATCCACGTA CCGGTTTACC TATTAATCAT AAGCTAGCAT CTGTGACCGT TTTGCATAAA GAATGTATGA CGGCCGATGG TTTTGCGACG GCGATGATGG TTTTAGGCAC AGAAGCGTCA TTGGAGCTTG CCAAGAAAGA ACACTTGGCG ATAATGCTAA TAGAAAAGCA AGGCGAAGGA TTTAAAGTCT ACTACAGTGA CGCCTTCAAG CCTTTCCTTA AGTAG
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Protein sequence | MWSKALICNF CIKGHPKELL VTMFKTLALK TPVLKTSVLK HSVNWLVLVG LAFFISACSK QDEVISLAGS TMGTTYHIKV VPNEQMPTAQ LLQAEIDLAL EQVNNQMSTY RPNSELSRFN QLPLEQSVEV SPDTIKVVKE GMRLYNVTDK ALDITLGPLV NLWGFGPDKR PTKVPTQADI DAAKAKTGIS ELSIEGNRLS KHNAHLYVDL SSIAKGFGVD KVASILDKYH ASGYLVEIGG ELSIKGTKGD GSSWRVAIEK PTDDGMAVQQ VIEPGTMAMA TSGDYRNYYE EEGQRFTHII DPRTGLPINH KLASVTVLHK ECMTADGFAT AMMVLGTEAS LELAKKEHLA IMLIEKQGEG FKVYYSDAFK PFLK
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