Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0935 |
Symbol | |
ID | 4251866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1091557 |
End bp | 1093608 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638117498 |
Product | TonB-dependent receptor |
Protein accession | YP_733072 |
Protein GI | 113969279 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000201333 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAGTC GCTACTTTGT GATGTCGCTG ACCGCGCTAG CGGTTTCCTG TGTTTACACT CATCCCCTTA ATGCAAACCC TCTCTACTCT CAGACGCTCG ATTTGATTGA ACTCAATAAC CAGTATCATT CCGGTGATGA TGGGATGCAG TTGAGTTACT TAAATAGTTT AACCCTACTA CGGGCAGACC ACAGTGGTAA CGGCGCGAAT ATCAGTATGC GTTCCGCCAG CCAAGGCGTG GCTGTGATGC AAGATAGAGT GTACTTCTCA CCCGCACCAT ATTCGGCGCC GCAGTTACAA CTATTGCCCA ATCTTTTGCT GCAGCAAAAT GTGACTAGTA CACCACTGGC GAATATGACG GTGGGCGGAC AAGGGGCCTT TGGTGTCGTG AACTATCAAA GCCTTGAAAT CACTGATCGA CCTCAGTCGG GCAGCTTTAA GGTTGAGGGG GCAACGGATT CCGACTTTAG TGCTGGCATG ACTTGGGGCG TAAAACAAAA AGAGTACGAT GCCTTATTCG CGGCGAATTA TCTTCAAGAA CAAGGTGATG CGAATTTTTT CAACGGCAGT GATGCCGACA GAAAGAAAAC CGACATACTG TTTAAGGTCA ACGCCGCCAG TTTGCTTGGA GCGCGAAGTC CGCAGCAAAC GGAATTTACC TATCAATTTA TCGACGATGA TAGTTATCGC TCACAACTTG GCAGTACTTT AGCTGACTGG CAACAGGATC CCTTACTCTT ATATTCGGCA ACGGCACAAG ATAAACTCCA GGGACGGCAG CACAAGTATC AGCTATCACA CCAAGTGGAT TTAGCTGGCA GTAAAGTGAT CAGCGACTTT TACTATCAAT CCTATTCACA ACAATTGAAT CAGCTTGGTT TATTTAATGG GCAAGAGATT AACGCAGCAA CCCTTGCAGA TATTGCTGAC TTTGATCATG CGCCAACCGC GGATGTTATT GATGTCGCTC TGCTCGTCCA AGACAACGAT TACAGTGCCT TTGGCGCCCA GACCCAAGCC ATAAACCAAT ACGGTGAACA TCAAATTATT TACAGTGCTC GCTATCATAC GGATAAGGCC GAGATGCGCT TTGGTGAGCA GACGGCGTTG TGGCAAGCGG ATAGAAGTCT TGTCTCTGAT GACTCGGGTG CCATATTAGC ATACACCGAT GATGCCACCG CGCTGACATC GGCAATCGAT TCGTTATTCC GCTGGCAAGG CATGCAAATC AAGTTAGGGC TTACTTACGA GCATGTGAGT ATTAATCGTG AAGTGAAGCA AGCGTTTGCG GGGCTGGACG AAGCGGATTT CTCCGATAGT GATTGGATGC CGCAGCTAGG TGTGCTCTAT GATGCGGGCG ATTGGCGTTT TAGTACCGAT ATCCGTCGGG CCTGGACTGC AGCAAGCGCG GGAAATACCA CTCAAGAGGC TCAGGTGTCG CTCCATTATC AAGTGAGTGC CCAATATGCG CGCGAAGGGA TAAAAGCGGA TTTACGGGCA TATGTTCAAG AGTTCGATAA TCTGCATGTG GATTGCGATA GCTATTCGAT GTGCGCCGAT GAACGCCTGT TAACTCAAGA GAATATTCCC GATGTGCTCA CCTACGGCGT AGAACTTGGC CTTGGCTATC GCTGGGATCT GGGTGGGGTA GAGCTACCCT TAGGACTAAA TTATCAATAT CTTAGCGCCG AGTATCAAAC CAGCACTTGC ACCGATGTCC AAGGCTGTGT TTTAGAGGGA GATAGATTGG CTTGGTTACC CGAACATCAA TTGCAATTGA GTGCGGGAAT TAAATATGCC CAATATCGAT TAAATCTTGA GGCGGCCTAT CAATCGGAGC GTGATTTCAG TCAGTTTGGC AGTGAGCAAG AACGGATTTC GGGCCAATGG CGGGTCGATT TGGCGGCGAA TTATGATTTT GATAAACACC ATAGGTTGTA TTTTAGGGTC GAAAATCTGC TCGATGAGTC CTTAGTCACC ACAGCATCAA ATAGCGGAAT TCGGTCTGAA AATGGAAGGA TCAGCTATTT GGGTTATCAA TGGCGTTTTT AA
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Protein sequence | MSSRYFVMSL TALAVSCVYT HPLNANPLYS QTLDLIELNN QYHSGDDGMQ LSYLNSLTLL RADHSGNGAN ISMRSASQGV AVMQDRVYFS PAPYSAPQLQ LLPNLLLQQN VTSTPLANMT VGGQGAFGVV NYQSLEITDR PQSGSFKVEG ATDSDFSAGM TWGVKQKEYD ALFAANYLQE QGDANFFNGS DADRKKTDIL FKVNAASLLG ARSPQQTEFT YQFIDDDSYR SQLGSTLADW QQDPLLLYSA TAQDKLQGRQ HKYQLSHQVD LAGSKVISDF YYQSYSQQLN QLGLFNGQEI NAATLADIAD FDHAPTADVI DVALLVQDND YSAFGAQTQA INQYGEHQII YSARYHTDKA EMRFGEQTAL WQADRSLVSD DSGAILAYTD DATALTSAID SLFRWQGMQI KLGLTYEHVS INREVKQAFA GLDEADFSDS DWMPQLGVLY DAGDWRFSTD IRRAWTAASA GNTTQEAQVS LHYQVSAQYA REGIKADLRA YVQEFDNLHV DCDSYSMCAD ERLLTQENIP DVLTYGVELG LGYRWDLGGV ELPLGLNYQY LSAEYQTSTC TDVQGCVLEG DRLAWLPEHQ LQLSAGIKYA QYRLNLEAAY QSERDFSQFG SEQERISGQW RVDLAANYDF DKHHRLYFRV ENLLDESLVT TASNSGIRSE NGRISYLGYQ WRF
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