Gene Shewmr4_0894 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0894 
Symbol 
ID4251685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1045662 
End bp1046657 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content49% 
IMG OID638117457 
Producttrans-hexaprenyltranstransferase 
Protein accessionYP_733031 
Protein GI113969238 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.38398e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCCAC AACCAGAGTC TATTATGGAT TTAAACGCTA TTCGTCAACT GGCTGACACT 
GATATGCAAG CAGTCAATCA GCTGATCTAT AAACAGCTGG AGTCAGATGT CGCCCTGATT
AACCAGTTAG GTTTCTACAT TATTAATGGT GGTGGTAAAC GTCTTCGTCC TTTACTGTCC
GTCCTCGCAG CGCGCGCCGT CGACTATCAA GGTGAAGCCC ACCTTAAGCT TGCCGCGATT
ATTGAATTTA TTCATACCGC TTCATTACTG CACGATGATG TGGTCGATGA ATCGACCCTC
AGACGCGGCC GCGAAACCGC CAACGCACTC TTTGGTAACA GCGCCAGTGT ATTAGTAGGT
GACTTCCTTT ATACCCGCTC ATTCCAAATG ATGACCGAAC TCGACAGCAT GCGAGTGCTG
CGTGTATTAG CCGATACCAC TAACGTATTG GCCGAAGGTG AAGTATTACA GCTAATGAAC
TGTAACGATC CTAATACCAC AGAAGAAAGC TATATGCGGG TGATCTATTG CAAGACCGCC
AAGCTATTCG AAGCCGCCAC GTTACTGGCC GCGGTATTAG CCGGCGCTAC ACCCGAGCAA
GAAACCGCAT TAGGCGACTA TGGTAAGTAT TTAGGCACCG CCTTCCAGCT GACCGACGAT
TTGCTCGACT ACACCGCCGA CAGTGAAGAG TTAGGTAAAA ACATCGGTGA TGATCTCGCC
GAAGGTAAAC CGACCTTACC GCTGATCTAT GCCATTGCCC ATGGCACAGA AGAAGAGCAG
CAACTCATTC GCCAAGCCAT TGAGCAAGGT GATGGCACCC ACGCCATTGA GAAAATAGTT
GCCGCTCTGC ATCACTGCGG CGCGCTCACT TACACTCAGC AAAAAGCTAT TGAAGAATCA
AATAAAGCGA TTGCGGCGCT GGCAGTATTA CCCGACAGTG ATTTCAAAAC CGCATTAATC
TCACTGGCGA AAATCTCCGT TGATCGTAAC CACTAA
 
Protein sequence
MAPQPESIMD LNAIRQLADT DMQAVNQLIY KQLESDVALI NQLGFYIING GGKRLRPLLS 
VLAARAVDYQ GEAHLKLAAI IEFIHTASLL HDDVVDESTL RRGRETANAL FGNSASVLVG
DFLYTRSFQM MTELDSMRVL RVLADTTNVL AEGEVLQLMN CNDPNTTEES YMRVIYCKTA
KLFEAATLLA AVLAGATPEQ ETALGDYGKY LGTAFQLTDD LLDYTADSEE LGKNIGDDLA
EGKPTLPLIY AIAHGTEEEQ QLIRQAIEQG DGTHAIEKIV AALHHCGALT YTQQKAIEES
NKAIAALAVL PDSDFKTALI SLAKISVDRN H