Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0819 |
Symbol | |
ID | 4250751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 953944 |
End bp | 954660 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638117382 |
Product | two component transcriptional regulator |
Protein accession | YP_732956 |
Protein GI | 113969163 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.309816 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000041871 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACAAGCG CGCCAATGCC TGAACCCCTA TCGCAAATCC TATTGATTGA AGACGACCTC CCCCTTGCCG AACTGGTCTG CACCTATTTA ACCCAAGAAG GCTATAAGCT TATCCATTTG GATAATGCTG AAGATGCGCT CATTCGTCAG GATACCGATG ATTTTGACCT CATCATTTGC GATGTCATGC TCCCAGGGCA GGATGGTTTT AGTATCTACC CGCAGCTTGC GGCCAGTTAT CCCTGTCCAA TAATCTTCCT GACGGCGCTC GATAATCATG CCGACCAAAT TCGCGGATTA AATCTAGGGG CCTGCGATTA CTTACTCAAA CCCGTTGTCC CTCCCCTGCT GTTGGCGCGG ATTAAGGCCA ACCTGCGCAA ACAGCAATCC AGCAGCAGTC GCAGTAAGCT TAAGTTACAC GACTTATTTT TAGACCCCAA CCTACAGCAG GTTAATCTTG GGGATGAAGC CTTATCCTTC ACCACCAAAG AATTTTCACT GCTGTGGATC TTCGCCCTCC ATGCTGGCAA AGTGCTGTCG CGGGAGTTTT TATTCGAACA ACTCGTCGGC CGCGAATATG ACGGTTTAGA CAGGGCTATA GACTTAAAAA TCAGCCGACT ACGTAAACGC TTAGATGAGC TGAATGTACC GGGGTTAGCC ATTACGACTA TTCACGGCAA AGGCTATTTA TTCAATTACT TACCTAAAAA AGGTTAG
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Protein sequence | MTSAPMPEPL SQILLIEDDL PLAELVCTYL TQEGYKLIHL DNAEDALIRQ DTDDFDLIIC DVMLPGQDGF SIYPQLAASY PCPIIFLTAL DNHADQIRGL NLGACDYLLK PVVPPLLLAR IKANLRKQQS SSSRSKLKLH DLFLDPNLQQ VNLGDEALSF TTKEFSLLWI FALHAGKVLS REFLFEQLVG REYDGLDRAI DLKISRLRKR LDELNVPGLA ITTIHGKGYL FNYLPKKG
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