Gene Shewmr4_0818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0818 
Symbol 
ID4250750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp952703 
End bp953932 
Gene Length1230 bp 
Protein Length409 aa 
Translation table11 
GC content48% 
IMG OID638117381 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_732955 
Protein GI113969162 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.01412e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAATTTC AGTTCTACCG CTTGTTTATT TTTTTATTGT TGTCCTGCGG ATTAGTGATC 
TGGAGCTTTG GTGAGCTCGC CGAGCATTTT GCCGAAGATA AGTACAATTA CCAAATAGAC
GTCGACGACT TACTGCAAAA CTACGATGAG CAGCTTCCAA AGATACAACG CCTCCCCATC
GGCGCCCTCT CGCTGCCGCA AAACTTAGAG GACTCGCTAC AACAGGGCGC GACTATCGCG
CTACGCCACA GTAGTGATGA ACTCTATTAC TATCACTTAG AGCAAGACAA ACAGCACATC
TTGATGTTAG GCCCAGTGCA AACCTCTATG CCCAAAGAGC GTAATACAAG TTTGATTTTA
TTAGGGCTGT ATTCATCTCT GTGCTTGGTT GCTCTATGGT GGATTTGGCC CGTATTTCGG
GATCTTAACC ATCTGCAACA GGCGGCTATC GAGTTTGGCC AATCCCCGCG CAAACGTCCC
AACGAGGTCC ATAAACACTC GGCCATTTTC CCGCTGGCCA AGGCGTTTAA CAGCGTCAGC
CACCAAATTG TCGACTTTGT ACAAATGCAT AAGGAACTAT CCCGCACCAT CTCCCATGAG
GTTCGTACAC CTTTAGCTCG GATGCGTTTT GCGTTGGAAA TCATTCGGCC ACAAATAGAC
AGCAATTATG CGCAGCGGTT AAGTGAAGAT ATTGATGATA TTGAACAACT TGCGGCAAAT
TACCTATCCT TTGCCCGCCT AGAGCATAAG GAAGAAACCT TAAATAAAGA GTCACAACCC
GTTGCCTTGT TTATGGAAAA ACTGGCGCAC AAATATGCTA TCTATCAACC CAAGTTAAAT
ATTGCATTTC ACTATGAGCC GCAGCAGGCC CACTTCGATC CCATTGCCAT GACGATTGCG
ATTCAAAACC TGATCCAAAA TGCCATGCGT TTCGCCCAGC ACGAGATCCA TGTCCACTTC
TATCGGGAGG GGAACATTAA TCGTATCAGT GTCGAAGATG ATGGTCCGGG ATTTGAGGGC
AAAGGCAAAA AGCTCGTAGT CGCCTTCGAA CGAGACAGCC AACAGAGCGA TACCAGCGGC
TATGGGTTAG GACTGTATAT CGTCAAAAAA ATTGCCACTT GGCATTATGG CACGCTGGAG
TTAAGTCGCT CGCAGGCCTT AGGCGGCGCC GAAATCAGCA TTATCTGGGA CGATGCCTTA
ACGCCTAAAG CCGAAACTGA CGCCGAGTAA
 
Protein sequence
MKFQFYRLFI FLLLSCGLVI WSFGELAEHF AEDKYNYQID VDDLLQNYDE QLPKIQRLPI 
GALSLPQNLE DSLQQGATIA LRHSSDELYY YHLEQDKQHI LMLGPVQTSM PKERNTSLIL
LGLYSSLCLV ALWWIWPVFR DLNHLQQAAI EFGQSPRKRP NEVHKHSAIF PLAKAFNSVS
HQIVDFVQMH KELSRTISHE VRTPLARMRF ALEIIRPQID SNYAQRLSED IDDIEQLAAN
YLSFARLEHK EETLNKESQP VALFMEKLAH KYAIYQPKLN IAFHYEPQQA HFDPIAMTIA
IQNLIQNAMR FAQHEIHVHF YREGNINRIS VEDDGPGFEG KGKKLVVAFE RDSQQSDTSG
YGLGLYIVKK IATWHYGTLE LSRSQALGGA EISIIWDDAL TPKAETDAE