Gene Shewmr4_0697 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0697 
Symbol 
ID4251541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp808736 
End bp810184 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content48% 
IMG OID638117260 
Productdiguanylate cyclase 
Protein accessionYP_732834 
Protein GI113969041 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.40018e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTGCA GATTCTGGGT TTTATTCTTC TGTTTATGCT CACCTTTATG TGTCAATGCC 
GAGCGCTTGG CCTCATACCT CAATGCTGCA GACGATCTCA GCAGTGCCAC CCAATTAATT
CGTTATTGCG TCGATCCCGA TTGGTTACCC TATGAAGCGA TTCGTGATGG TCAACATGTT
GGGATTTCGT CGGATTATAT TCGTTACATC GAATCCCATT CATCGTTAAA GTTTAGTCTG
GTACCTACCA CCTCTTGGAC ACAAACCTTA GATTTTCTGC AAACGGGACG CTGCAATTTA
ACTCCGCTAC TCAATAAGAC TGTGACTCGG GAGCAGTTTT TGCATTTTAG CCATGTGTAT
TTTCGTTCCC CCAATGTATT GGTCTCTCTC AAGGACCAGC CCTTTTTGCA AGGGTTTGAA
AACATCGGTC CGCGCACCTT GGCGGTGCCT GATGGCTATC GTCTCGCCGA ATATATTCAG
CATTACTATC CCAAGGTTCG CACTATTACA GTGGCGAGCG AGCCTGCGGG GCTTGAGGCT
GTGCTTGAGA AAAAAGTCGA TCTCTTTGTG GGGTCGATGT TTTCCGTCAA TGCCTATATT
CAGCAGACGG GATTCAATCA CCTAAAAATT GCCGGTTGGG GTGGCCCGGA GGATGAACTG
CGGGTGGGGG TGAGCGCTGG ACATGAGGCG CTGCTGCCAT TAATCAATCA AGTGCTAGAC
AATGTAGATG AGCTGGAGCG GATCAGGATT TACCAGAAAT GGAACAACAT CACTATCATC
GATGAAACCA ACTACTTACT TATCTATCAA GTGATTGCGG CGACACTGTT AGTCGTGTGC
CTACTGGTAA CGCGCACTTA TATGATCAGT CGTTACAATC GCCGACTAAC CGATAAAAAC
CAGCAGCTTG AAGAATTGCG TTTGCAGTTA GAGCAAAGCA ATACCGAGCT TGAGTTTTTA
TCTACCCATG ATCCGCTCAC GAAACTCTAC AATCGGCATT ACTTTAATCG ACAATTTGTC
CATGAACACC GCGCCGCCGC TTCCACGCAA GGGGCCATTT GCTTGGTGAT GTTAGATATC
GATTTCTTTA AAGAGATCAA TGACACCTTA GGCCATTCCG TTGGGGATAC TATTTTGATG
GAGTTGTCCT CTGTGTTGCA GCATTGTGTG CGTGAAAGCG ATGTGGTTGC GCGTTGGGGC
GGGGAAGAGT TTGTGATCCT CTGCCATAAC ACCTCGCTCG AGGCCGTTAA GTCTCTGTGT
CAGCGGATTG CAACAGCCAT CAAAGATAAC CATTTCAGTG GTGATGTGCG CCTGACTTGT
AGTTTTGGGA TTGCCAAACT CGCTGCAAAT GAGCCGATGC AATCTTGCTT CGAACGGGCA
GATAAGGCGC TATATCAGGC AAAAGCACAG GGGCGGGATC AGATTTGTGT CGGTGAAACT
CACCTTTAA
 
Protein sequence
MGCRFWVLFF CLCSPLCVNA ERLASYLNAA DDLSSATQLI RYCVDPDWLP YEAIRDGQHV 
GISSDYIRYI ESHSSLKFSL VPTTSWTQTL DFLQTGRCNL TPLLNKTVTR EQFLHFSHVY
FRSPNVLVSL KDQPFLQGFE NIGPRTLAVP DGYRLAEYIQ HYYPKVRTIT VASEPAGLEA
VLEKKVDLFV GSMFSVNAYI QQTGFNHLKI AGWGGPEDEL RVGVSAGHEA LLPLINQVLD
NVDELERIRI YQKWNNITII DETNYLLIYQ VIAATLLVVC LLVTRTYMIS RYNRRLTDKN
QQLEELRLQL EQSNTELEFL STHDPLTKLY NRHYFNRQFV HEHRAAASTQ GAICLVMLDI
DFFKEINDTL GHSVGDTILM ELSSVLQHCV RESDVVARWG GEEFVILCHN TSLEAVKSLC
QRIATAIKDN HFSGDVRLTC SFGIAKLAAN EPMQSCFERA DKALYQAKAQ GRDQICVGET
HL