Gene Shewmr4_0694 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0694 
Symbol 
ID4251538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp801850 
End bp802647 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content47% 
IMG OID638117257 
ProductBeta-lactamase 
Protein accessionYP_732831 
Protein GI113969038 
COG category[V] Defense mechanisms 
COG ID[COG2602] Beta-lactamase class D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.96311e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.535938 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGCGT TAGCCTTATC GGCTGTGTTG ATGGTGACAA CGATGATTGG CATGCCTGCG 
GTGGCAAAGG AGTGGCAAGA GAACAAGAGC TGGAATGCTC ACTTTAGCGA ACATAAAACC
CAAGGCGTGG TTGTGCTCTG GAACGAGAAT ACACAGCAGG GTTTTACTAA CGATCTTAAA
CGGGCAAACC AAGCATTTTT ACCGGCATCG ACCTTTAAGA TCCCAAACAG TTTAATTGCC
TTGGACTTAG GTGTGGTTAA GGATGAGCAT CAGGTCTTTA AATGGGATGG ACAGACGCGA
GATATCGCCG CATGGAATCG TGACCATGAT TTAATCACCG CGATGAAGTA TTCGGTTGTG
CCTGTTTATC AAGAATTTGC CCGCCAAATT GGCGAGGCTC GTATGAATAA AATGCTGCAC
GCCTTCGATT ATGGCAATGA GGATATCTCG GGCAATTTGG ACAGTTTTTG GCTCGATGGT
GGTATTCGCA TTTCGGCTAC CCAGCAAATC GCTTTTTTAC GCAAGCTGTA CCACAACAAG
CTGCACGTTT CTGAGCGTAG TCAGCGCATC GTGAAACAAG CCATGCTGAC CGAGGCAAAT
GCCGACTATA TCATCCGAGC GAAAACCGGC TATTCGGTCA GAATTGAACC GAAAATCGGT
TGGTGGGTTG GCTGGGTCGA ACTGGATGAT AATGTGTGGT TTTTCGCGAC CAATATGGAT
ATGCCTTCCG CTGAGGGCTT AGGGTTACGT CAAAGCATTA CGAAAGCAGT GCTGAAACAG
GAAAAAATTA TTCCTTAG
 
Protein sequence
MRALALSAVL MVTTMIGMPA VAKEWQENKS WNAHFSEHKT QGVVVLWNEN TQQGFTNDLK 
RANQAFLPAS TFKIPNSLIA LDLGVVKDEH QVFKWDGQTR DIAAWNRDHD LITAMKYSVV
PVYQEFARQI GEARMNKMLH AFDYGNEDIS GNLDSFWLDG GIRISATQQI AFLRKLYHNK
LHVSERSQRI VKQAMLTEAN ADYIIRAKTG YSVRIEPKIG WWVGWVELDD NVWFFATNMD
MPSAEGLGLR QSITKAVLKQ EKIIP