| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0673 |
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| Symbol | |
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| ID | 4251884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 781727 |
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| End bp | 783202 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117236 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_732810 |
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| Protein GI | 113969017 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0705505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGT CAACAGTTAA CCATGACGCC ACAACTTCAA
CAGGCCATTC GTCTGTTGCA ATTGTCGTCA TTGGAACTGC AGCAAGAGAT CCAGCAAGCC
TTAGACTCTA ATCCTCTTCT CGAGCTGGAA GAGGAGCAAT TTGACGCGCC TACCGAACGT
AAGCAAGATA TCGCCGATAC CGACTTTAGC GAAACGACGG CTCAGCCACA GGAACAAGAC
AATTCCACCG TGGATATTGC CGAGTCGTTG ACCAAAGAAT CCCTGCCCGA AGAACTGCCC
ATGGACACCA CTTGGGATGA AGTCTTTACC GCATCGCCAA ACTCAGGTTC TGGTGCTAGC
CGTGAAGATG ATATGCCCTT TCAAGGGGAA ACCAGTGAAG GCCTGTACGA ACATTTAGAA
TGGCAGAAAA ACCTTACGCC CTTCTCTGAA ACCGATTTAG CCATCGCCAC CGCAATTATT
GATGCCATCG ACGATCAGGG ATATCTCACT CAAAGTACTG AAGATATCCT CGAGGCCATG
GGCAATCCAG AGATAGAACT GGATGAAGTC GAAGCCGTGC TCAAGCGTAT TCAACACTTC
GACCCCGTTG GTGTCGCGGC AAAGGATTTA AGCGAATGTC TGCTTATCCA ACTCTCCCAT
TTTTCGCCGG ACACCCCACA CCTCGAAAAC GCCCGCATGC TGATCAAAGA TCATTTAGAT
CTGATCGCTG CCCGCGACTT TAGATTATTA ATGCGTAAGA CCAAACTCAA AGAGGACGAC
TTAAGGGACA GCATAGCGCT GATCCAAACC TTAAACCCTC GCCCCGGTTT ACTCATCACC
CCTGTCGATG AAGAATATGT GATCCCCGAT GTATCGGTAT CGAAGAAAAA CGGCCGTTGG
GTGGTCGAAT TAAACCCTGA CTGCATGCCA AAAATCAATG TTAATCAGCA ATATGCAGCC
ATGGCGCGCA GCACCAAAAG TCAGGCCGAT AGCCAATTTA TTCGCGGCCA TCTGCAAGAG
GCTAAATGGT TTATCAAAAG TCTTGAAAGC CGCAACGAAA CACTGCTCAA GGTGGCAAAC
TGCATAGTGC AATATCAACA GGGTTTCTTC GAATACGGTG AAGAAGCCAT GAAACCTATG
GTCCTGAACG ATATCGCCGA GGCGGTCGAG ATGCATGAAT CCACCATTTC ACGGGTGACG
ACGCAAAAGT ACATGCATAC CCCAAAGGGA CTTTTTGAAC TAAAATATTT CTTCTCAAGC
CACGTCGGGA CTGATGATGG CGGTGAGTGC TCATCCACGG CAATCAGAGC CTTCATTAAG
AAACTGGTTG CAGCGGAAAA CCAGAAAAAA CCATTAAGCG ACAGCAAGAT GGCGCAACTT
CTGGCAGAAC AGGGAATTAA CGTTGCGCGC AGAACCATTG CGAAGTACCG AGAAGCGATG
CTTATTCCCC CTTCCAATCA GCGTAAAAGT TTATAG
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| Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EEQFDAPTER
KQDIADTDFS ETTAQPQEQD NSTVDIAESL TKESLPEELP MDTTWDEVFT ASPNSGSGAS
REDDMPFQGE TSEGLYEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM
GNPEIELDEV EAVLKRIQHF DPVGVAAKDL SECLLIQLSH FSPDTPHLEN ARMLIKDHLD
LIAARDFRLL MRKTKLKEDD LRDSIALIQT LNPRPGLLIT PVDEEYVIPD VSVSKKNGRW
VVELNPDCMP KINVNQQYAA MARSTKSQAD SQFIRGHLQE AKWFIKSLES RNETLLKVAN
CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS
HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM
LIPPSNQRKS L
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