| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0616 |
|---|
| Symbol | |
|---|
| ID | 4251513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 711692 |
|---|
| End bp | 712366 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638117179 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_732753 |
|---|
| Protein GI | 113968960 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0199047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGC TACTCGTTGA AGATAATCCG ATGTTGGTCT CCGAACTGGA GAAGCAACTC
AAACAGGCTG GCTACGTTAC CGATATTACT GACAAAGCAG TTGAAGCCGA TTACCTCGTT
AAAGAAACCC AATACGACTG CGTGATCTTA GATATTGGCC TCCCCGACGG CAATGGACTG
GAATTACTCG AAGGCTGGCG TAATCAAGGC ATTAGCACGC CAGTTATCAT GCTGACAGCC
CGTAGCCAAT GGCATGAAAA GGTCGAAGGC TTTAATGCCG GCGCCGATGA TTATTTAGGT
AAACCCTTCC ATGCACAGGA ATTACTGGCG CGTATCCAAG CGCTTATCCA CCGCGCGCAC
GGCCGATTAA ATAATCCCAG TAAACAGTTG AGCTATGGTG GCGTCACCTT AGATGAAGCC
GAGCAGACGG TGAGCGTTGG CGAACATTTA TATGAGTTGA CCGCCATGGA GTTCAGGCTG
TTAAAAATCT TCCTCATGTC GCCTAAGAAG CTGTTATCTA AGGCACAGCT GACGGACAAG
CTCTATCAGT TTGACGATGA GAAAGAGAGT AACGTGGTTG AAGTTTACGT GACTCACCTG
CGTAAAAAAC TCGGCAAAAC CGCGATTGAA ACCCGCCGCG GCCAAGGTTA CATCTTCCAC
GGCCTGACTG CATGA
|
|---|
| Protein sequence | MKLLLVEDNP MLVSELEKQL KQAGYVTDIT DKAVEADYLV KETQYDCVIL DIGLPDGNGL
ELLEGWRNQG ISTPVIMLTA RSQWHEKVEG FNAGADDYLG KPFHAQELLA RIQALIHRAH
GRLNNPSKQL SYGGVTLDEA EQTVSVGEHL YELTAMEFRL LKIFLMSPKK LLSKAQLTDK
LYQFDDEKES NVVEVYVTHL RKKLGKTAIE TRRGQGYIFH GLTA
|
|---|
| |