Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0562 |
Symbol | |
ID | 4251790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 645728 |
End bp | 647383 |
Gene Length | 1656 bp |
Protein Length | 551 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638117121 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_732699 |
Protein GI | 113968906 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCGCT CACTCATATT CATGTTCGCC CTCAGCTTTC CCCTGCTATT GAGTACCGAG GTTTTCGCGA CGGATGCAGC CGACCCCGTT GCCGCCACTC AAACCACTAC CGTCCCTAAC GAAGCCCAAA ACGAATTAAT TTCGCTAAAA ACAGCGATTA AAGAGGATAT TGCGCGCTTA TCCCAATCCC AAGGTGAATT GCGCACCATT GTTGAATATC GCATTCAAAA CAAGACATTG CAGTTACGCA ATAAGATTAA AGTACTGTTA GAAGATGAGA ACTACGATAA AGCCTTTATG TTGGCATTGG TGCAAGAGCA GCTGACATTT AATCTTAAAA TCAACGACTA CTTCAATGAT ATCGTCACCA AGTTGTCCCA TAAACTCGGC TCGGCGGATG ATGAGTCGAC CTTACTCGAA ATCTCTAAAC GTGAGCTCGA TAAGGACAAC AACTACAAAC AACGACTCGA GACCTTAAAC TGGCTCGGCC AAATGGGCGA AGATGTCGCA GCGCAGAAAG CAGAGCTGAC CCAAATTCTC TTAAGTCGCG CCGATAACTT CGATAGCTTT GTCACTTTTA CCCAGCAGCA GTTACAAAAT GCAGTTAACG CCGCCACTAA TGCCGGTAAA GATGTGACCG CCGCGCAAAC CAGTCGCGTC ATGCAGCTAA AGGACAGATT GGCGCTCAAT AGCCAGAGCC TTAGCATAGA TATCGACTTA CTCGATGCGC TCGAGCAAAA CACCGCCTCG CTGAAAAAGA CCCTGTTCAG TATCTCAGGC GATATCACTC AGGATGTCTT GAGTATCGAT GTGGCCTCAA GCCTAGTCGA ACAATGGCTG CATACGGCCA AAGAACAGTC CATCAACCAT GGCCCGACTT TAGTCTTTAA GCTATTTATC TTCTGTATGA TCCTGTTTGT CGCAAGCCTT GCGGGCAAAC TGGCGAAGAA GATTGTGAGC AATACCGTTA GTAACTCTAA ATTAAATTTC AGTAAGTTAC TGCAAGACTT CTTTACCTCG CTCTCGGGCA AAGCGGTCTT CACTATCGGT GTACTGATTG CCCTCTCCCA GCTTGGCATT GAGTTAGGCC CGTTATTGGC AGGCTTTGGT ATCGCCGGTG TGATCATCGG TTTCGCCCTG CAGGATTCAC TCTCGAACTT TGCCTCGGGC ATGATGATTT TGATCTATCG TCCCTACGAT GTGGGTGACT TGATTAGCGC CGCTGGTGTA ACGGGGCGCG TAAGCCATAT GAGCCTAGTC TCCACCACAA TTAAAACGTT AGATAACCAA AGGCTTATTA TTCCAAACAA CAAGATTTGG GGTGATACCA TTAACAATAT TACCGCCGAG CACCAACGCC GCGTCGACAT GACCTTCGGC ATTGGCTATG GCGACAATAT TGAGCACGCC GAAGCCGTGC TTAAGTCGAT TGTGGAAGCG CATCCTAAGG TGCAAAAAAT CCCTGCACCG CTCATTAAGC TGCACGTTTT AGGGGAGTCC TCGGTCGACT TTATCGTCCG TCCTTGGGCT AAACCCGAAG ATTATTGGGA TGTGTATTGG GATATTACCC GCGAAGTGAA AATGCGCTTC GATGCCGAGG GCATCAGCAT TCCTTTCCCG CAGCGCGATG TACATATTTA CCAAACCAGT AAATAA
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Protein sequence | MRRSLIFMFA LSFPLLLSTE VFATDAADPV AATQTTTVPN EAQNELISLK TAIKEDIARL SQSQGELRTI VEYRIQNKTL QLRNKIKVLL EDENYDKAFM LALVQEQLTF NLKINDYFND IVTKLSHKLG SADDESTLLE ISKRELDKDN NYKQRLETLN WLGQMGEDVA AQKAELTQIL LSRADNFDSF VTFTQQQLQN AVNAATNAGK DVTAAQTSRV MQLKDRLALN SQSLSIDIDL LDALEQNTAS LKKTLFSISG DITQDVLSID VASSLVEQWL HTAKEQSINH GPTLVFKLFI FCMILFVASL AGKLAKKIVS NTVSNSKLNF SKLLQDFFTS LSGKAVFTIG VLIALSQLGI ELGPLLAGFG IAGVIIGFAL QDSLSNFASG MMILIYRPYD VGDLISAAGV TGRVSHMSLV STTIKTLDNQ RLIIPNNKIW GDTINNITAE HQRRVDMTFG IGYGDNIEHA EAVLKSIVEA HPKVQKIPAP LIKLHVLGES SVDFIVRPWA KPEDYWDVYW DITREVKMRF DAEGISIPFP QRDVHIYQTS K
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