Gene Shewmr4_0562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0562 
Symbol 
ID4251790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp645728 
End bp647383 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content48% 
IMG OID638117121 
ProductMscS mechanosensitive ion channel 
Protein accessionYP_732699 
Protein GI113968906 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCGCT CACTCATATT CATGTTCGCC CTCAGCTTTC CCCTGCTATT GAGTACCGAG 
GTTTTCGCGA CGGATGCAGC CGACCCCGTT GCCGCCACTC AAACCACTAC CGTCCCTAAC
GAAGCCCAAA ACGAATTAAT TTCGCTAAAA ACAGCGATTA AAGAGGATAT TGCGCGCTTA
TCCCAATCCC AAGGTGAATT GCGCACCATT GTTGAATATC GCATTCAAAA CAAGACATTG
CAGTTACGCA ATAAGATTAA AGTACTGTTA GAAGATGAGA ACTACGATAA AGCCTTTATG
TTGGCATTGG TGCAAGAGCA GCTGACATTT AATCTTAAAA TCAACGACTA CTTCAATGAT
ATCGTCACCA AGTTGTCCCA TAAACTCGGC TCGGCGGATG ATGAGTCGAC CTTACTCGAA
ATCTCTAAAC GTGAGCTCGA TAAGGACAAC AACTACAAAC AACGACTCGA GACCTTAAAC
TGGCTCGGCC AAATGGGCGA AGATGTCGCA GCGCAGAAAG CAGAGCTGAC CCAAATTCTC
TTAAGTCGCG CCGATAACTT CGATAGCTTT GTCACTTTTA CCCAGCAGCA GTTACAAAAT
GCAGTTAACG CCGCCACTAA TGCCGGTAAA GATGTGACCG CCGCGCAAAC CAGTCGCGTC
ATGCAGCTAA AGGACAGATT GGCGCTCAAT AGCCAGAGCC TTAGCATAGA TATCGACTTA
CTCGATGCGC TCGAGCAAAA CACCGCCTCG CTGAAAAAGA CCCTGTTCAG TATCTCAGGC
GATATCACTC AGGATGTCTT GAGTATCGAT GTGGCCTCAA GCCTAGTCGA ACAATGGCTG
CATACGGCCA AAGAACAGTC CATCAACCAT GGCCCGACTT TAGTCTTTAA GCTATTTATC
TTCTGTATGA TCCTGTTTGT CGCAAGCCTT GCGGGCAAAC TGGCGAAGAA GATTGTGAGC
AATACCGTTA GTAACTCTAA ATTAAATTTC AGTAAGTTAC TGCAAGACTT CTTTACCTCG
CTCTCGGGCA AAGCGGTCTT CACTATCGGT GTACTGATTG CCCTCTCCCA GCTTGGCATT
GAGTTAGGCC CGTTATTGGC AGGCTTTGGT ATCGCCGGTG TGATCATCGG TTTCGCCCTG
CAGGATTCAC TCTCGAACTT TGCCTCGGGC ATGATGATTT TGATCTATCG TCCCTACGAT
GTGGGTGACT TGATTAGCGC CGCTGGTGTA ACGGGGCGCG TAAGCCATAT GAGCCTAGTC
TCCACCACAA TTAAAACGTT AGATAACCAA AGGCTTATTA TTCCAAACAA CAAGATTTGG
GGTGATACCA TTAACAATAT TACCGCCGAG CACCAACGCC GCGTCGACAT GACCTTCGGC
ATTGGCTATG GCGACAATAT TGAGCACGCC GAAGCCGTGC TTAAGTCGAT TGTGGAAGCG
CATCCTAAGG TGCAAAAAAT CCCTGCACCG CTCATTAAGC TGCACGTTTT AGGGGAGTCC
TCGGTCGACT TTATCGTCCG TCCTTGGGCT AAACCCGAAG ATTATTGGGA TGTGTATTGG
GATATTACCC GCGAAGTGAA AATGCGCTTC GATGCCGAGG GCATCAGCAT TCCTTTCCCG
CAGCGCGATG TACATATTTA CCAAACCAGT AAATAA
 
Protein sequence
MRRSLIFMFA LSFPLLLSTE VFATDAADPV AATQTTTVPN EAQNELISLK TAIKEDIARL 
SQSQGELRTI VEYRIQNKTL QLRNKIKVLL EDENYDKAFM LALVQEQLTF NLKINDYFND
IVTKLSHKLG SADDESTLLE ISKRELDKDN NYKQRLETLN WLGQMGEDVA AQKAELTQIL
LSRADNFDSF VTFTQQQLQN AVNAATNAGK DVTAAQTSRV MQLKDRLALN SQSLSIDIDL
LDALEQNTAS LKKTLFSISG DITQDVLSID VASSLVEQWL HTAKEQSINH GPTLVFKLFI
FCMILFVASL AGKLAKKIVS NTVSNSKLNF SKLLQDFFTS LSGKAVFTIG VLIALSQLGI
ELGPLLAGFG IAGVIIGFAL QDSLSNFASG MMILIYRPYD VGDLISAAGV TGRVSHMSLV
STTIKTLDNQ RLIIPNNKIW GDTINNITAE HQRRVDMTFG IGYGDNIEHA EAVLKSIVEA
HPKVQKIPAP LIKLHVLGES SVDFIVRPWA KPEDYWDVYW DITREVKMRF DAEGISIPFP
QRDVHIYQTS K