Gene Shewmr4_0440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0440 
Symbol 
ID4251914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp498888 
End bp501458 
Gene Length2571 bp 
Protein Length856 aa 
Translation table11 
GC content49% 
IMG OID638116999 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_732577 
Protein GI113968784 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATTG GCAACAAAAT ATTGGTATTT ATTGCAGGAT TCTGTCTACC AGCGGTTGTG 
CTTGTGTCCT ATTGTCTTGG CTATTGGTTC GACCATAGGG TCGAGTTGCT GCGGCAGGAC
AATATCCAGC ATGAACTCAC AAACGTTCAA CAGCAGTTTC TTATCGATAT CGACCGTTTA
AGTTTTCTCA CCCAAATCTA TGCCTCTCCG CTGTCTCGAG TCGATGGCGA ACTGCTGCAA
TCGATAGAAT CATCATGGCT TGAGAGTGCC ATGTCCGCCA ATCTGCATTG GTTTATTCTG
CAAGCTGGAC AGCTGCAGAG TGTCCTCGCT AATACTTCCA GCCTTGCATT ATCGACCCAA
CAAGAGATTG CCGATGCGGT GCTCGCCGCC AATAAACCAA AGGTTGCAGG GGCTTATCTT
GCCGGAGATA CAGGCTTAGT CGTCACCGCG GTTGCCGTCG CGCCCGAGGA ATACGTGCTC
TTGGTGCGGC AGATATCGGC GCAGGATTTA TTGGAATATG CCCAAGCACC ATTAGTCACT
CAGGTGTTGA TGAGCCGCAG CAACACCACG GTTGCTAAAG ATTACCTCAG CTTTGTGCCC
ATCCCGAGTT TATTGAATAA CGCGCCATTG TATCTGCAGG TGCAGTTTTC TACTGATCCC
TTGCAGGAGG TCAAGCTCGA TCTCGATTGG GTTTCAGTCG GCATTATTTT ACTCGGTGTA
TTAATTGTTG CGCTGGGCTA CATTTGGCTC CGAACTGGTC TTTTAAAGCC GTTTCAGAGC
ATGATGCAGC AGTTGGCATT GGTCGATCCT ATGGCAAGCG TTTATCGGCC TGTGAGCGGC
GAAGGTAACG CCGAGTTAGA AGTGCTGGCA AGCCGTGTAA ACAGCTTACT TGCTCGCATA
TATCAGCAGA AAGAACGCGG TAAAACTACT CTAGAATCGA TTGCCGAGGC GGTGATCCTG
ACCGATATCG ATGCCAAAGT GATCTACATG AATCCCAAGG CCGAGTCCTT GCTCGATGTT
GCCAGTTGTT ATGCCGTTGG CCAGAGCCTA GCATCGTTAT TAAAAGCGGG GGAGCAATTA
AATCAAGCGG TATTCCAGTG TATGCGCCTA GGTGAGACTA CGCCTCAAGT CGCTAAAATC
AAGTTATTAA CCGCAACACC ACGGATTATC GAACGCAGCA TTAGTAACGT GTTGAACCAC
GATAAAGAGA TTACCGGCAC TGTGGTGGTG CTGCGAGATA TTACCCAAGA AGAGCTGCTC
AAGCGTCAGC TACAAAAACG CGCCAACTTC GATGGCATTA CCGGCTTGCT TAATCGGCAA
GCCTTTGAAG AGCAGTTACC GCAGTTCGCT GGTCAGGCTA AGCGCTTAGC CGTGTGTTAT
CTGGATTTAG AGCAGTTTAA GCTGATAAAC GATAGTTGTG GTCATACCGC TGGCGACCGC
ATGTTGGCCA TGGTGGCGCG GGCGATTCAA TCCTGTCTGG GGCCGCAGGC ATTATTAGCC
CGTTTAGGTG GCGATGAATT TGGCTTGGTC ATTTGCGACA GCACTGCCTT GGCTGTGGCG
CAGCAGCTAA AACAAATTAT CGCTCAGGTA TCGCTGCAAG TGCTGCATGA TAAAAACTGT
AACTATAAAG TCGGTTTGAG TATCGGTGTC GCCTTTGGAC GAGCGCCCTA TATCAATGCG
TTAGAGCTAC TCAAGGATGC GGATATTGCT TGTATCGCCG CCAAAGCCAA GGGCACAAAC
CAAATCCATT TTTATGATGA TAAAGATAAA GAGCTTACCT ACCAGCGCAA TGCCCCAAAA
TGGGCGGTGC GTATCGCGCA AGCGATTGAA GAAAATGAAC TCCTGCTCTA CTACCAACCG
ATCCGCGGTT TAGGGGCGAG TTCTAAACGG CAACGGATGG AAATCCTGCT CAGGATCCAA
GAACCCTGCG GCCGTATTTT GGCTCCAGCG CAGTTTATTG CCGCTGCTGA GCGCTTTAAG
TTGATGCCTG AAATCGATAA AGAAGTGATA CGTAAAGCTT TTTTATGGCT ATCCTTAAAT
CCTCAGCTTT GGCCGGATCA CTGTATTTCA ATCAACCTTT CAGGCAATAG CTTAGGCGCC
GAAGGCATGG TGGAATATAT CGCTCAGCAG CAACATATTT TCGATATTCC GAGCCAGTGT
GTTTGCTTTG AAATCACCGA AACCACGGCG ATTCAAAATC GCCACCGCGG CATGGAGATG
CTTAGGCAGC TGCGTAAACT CGGGTTTTCC TTTGCATTGG ATGATTTTGG AAGCGGCTTT
GCGTCCTATG GTTATCTGCG GGAGCTACCA GTGGACTATG TCAAAATTGA TGGTTGCTTT
GTGAAAAACC TTGCGGTTAA TGCCAAGGAT TATGCCATCG TCAAATCGAT TCAGGACGTG
TGCCGAGTGA TGGGGATTGA GACCGTCGCC GAATTTGTGG AAAACCAAGA TATTATCGAT
AGATTACAGG TGATTGGTAT TAACTATGCT CAAGGTTATG CGATAGGACG GCCGCAACCT
TTGACCAGTT ATTGCGAACC GTTTGCAGTA CCGCAAGCAC AACGCGCATA A
 
Protein sequence
MHIGNKILVF IAGFCLPAVV LVSYCLGYWF DHRVELLRQD NIQHELTNVQ QQFLIDIDRL 
SFLTQIYASP LSRVDGELLQ SIESSWLESA MSANLHWFIL QAGQLQSVLA NTSSLALSTQ
QEIADAVLAA NKPKVAGAYL AGDTGLVVTA VAVAPEEYVL LVRQISAQDL LEYAQAPLVT
QVLMSRSNTT VAKDYLSFVP IPSLLNNAPL YLQVQFSTDP LQEVKLDLDW VSVGIILLGV
LIVALGYIWL RTGLLKPFQS MMQQLALVDP MASVYRPVSG EGNAELEVLA SRVNSLLARI
YQQKERGKTT LESIAEAVIL TDIDAKVIYM NPKAESLLDV ASCYAVGQSL ASLLKAGEQL
NQAVFQCMRL GETTPQVAKI KLLTATPRII ERSISNVLNH DKEITGTVVV LRDITQEELL
KRQLQKRANF DGITGLLNRQ AFEEQLPQFA GQAKRLAVCY LDLEQFKLIN DSCGHTAGDR
MLAMVARAIQ SCLGPQALLA RLGGDEFGLV ICDSTALAVA QQLKQIIAQV SLQVLHDKNC
NYKVGLSIGV AFGRAPYINA LELLKDADIA CIAAKAKGTN QIHFYDDKDK ELTYQRNAPK
WAVRIAQAIE ENELLLYYQP IRGLGASSKR QRMEILLRIQ EPCGRILAPA QFIAAAERFK
LMPEIDKEVI RKAFLWLSLN PQLWPDHCIS INLSGNSLGA EGMVEYIAQQ QHIFDIPSQC
VCFEITETTA IQNRHRGMEM LRQLRKLGFS FALDDFGSGF ASYGYLRELP VDYVKIDGCF
VKNLAVNAKD YAIVKSIQDV CRVMGIETVA EFVENQDIID RLQVIGINYA QGYAIGRPQP
LTSYCEPFAV PQAQRA