Gene Shewmr4_0430 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0430 
Symbol 
ID4251904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp480269 
End bp481696 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content49% 
IMG OID638116989 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_732567 
Protein GI113968774 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.1549e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAACG AAATCAAAAC TCAGGTAGTG GTATTAGGTG CAGGTCCTGC GGGATATTCT 
GCTGCCTTCC GTGCGGCTGA CTTAGGTCTG GAAACCGTTA TCGTTGAACG TTTTAGCACT
TTAGGTGGCG TGTGTCTGAA CGTGGGTTGT ATCCCATCTA AAGCCCTGCT ACACGTTGCT
AAAGTGATCG AAGAAGCCAA AGCCGTTGCT GCACACGGTG TTGTGTTCGG CGAGCCAACA
ATCGACTTAG ACAAGTTACG CAGCTTCAAG CAAAAAGTGA TCAGCCAGTT GACTGGTGGC
TTAGGCGGCA TGTCTAAAAT GCGTAAAGTA AACGTTGTTA ATGGCTTCGG TAAATTTACT
GGCCCTAACA GCTTAGAAGT GACTGCGCAG GACGGCACTG TGACTGTTGT TAAGTTTGAC
CAAGCGATCA TCGCTGCGGG TTCTCGCCCA ATCAAACTGC CATTCATTCC CCATGAAGAC
CCACGTATTT GGGATTCGAC CGACGCATTA GAACTGAAAG AAGTTCCTGG CAAACTGCTG
GTAATGGGCG GCGGTATCAT CGGTTTAGAA ATGGGTACTG TTTACTCTTC TCTGGGCAGT
GAAATCGATG TGGTTGAAAT GTTCGACCAA GTGATCCCAG CGGCTGACAA AGACGTCGTT
CGCGTATTCA CTAAGCAAAT CAAGAAGAAA TTCAACCTGA TCCTCGAAAC TAAAGTGACT
GCGGTTGAAG CCCGTGAAGA CGGTATCTAT GTTTCGATGG AAGGTAAGAG CGCGCCAGCA
GAGCCAGTAC GTTACGATGC AGTGTTAGTG GCAATCGGTC GTACCCCTAA TGGCAAGCTG
ATCGACGCTG AAAAAGCGGG CGTTAAGATC GATGAGCGTG GTTTCATCAA CGTAGACAAG
CAATTACGTA CTAACGTACC GCACATCTAC GCTATCGGTG ACATCGTTGG TCAACCAATG
TTGGCTCACA AAGGCGTGCA CGAAGGCCAC GTAGCGGCCG AAGTGATCGC GGGTATGAAG
CACTACTTCG ATCCAAAAGT TATCCCATCA ATCGCTTACA CAGACCCTGA AGTGGCCTGG
GTTGGTCTGA CTGAGAAAGA AGCTAAAGAG CAAGGTATTG CTTACGAAAC AGCGACTTTC
CCATGGGCAG CCTCTGGCCG TGCAATCGCT TCAGATTGCA GCGAAGGTAT GACTAAGCTG
ATTTTCGATA AAGACACTCA CCGCGTTATC GGTGGTGCTA TCGTGGGTGT GAACGGCGGA
GAACTGTTAG GCGAAATCGG TCTGGCAATC GAAATGGGTT GTGATGCTGA AGATTTAGCA
TTAACCATCC ACGCTCACCC AACTCTGCAC GAGTCAGTGG GTCTAGCGGC TGAAATCTAC
GAAGGTTCTA TTACTGATCT GCCAAACCCA AAGGCAAAGA AAAAGTAA
 
Protein sequence
MSNEIKTQVV VLGAGPAGYS AAFRAADLGL ETVIVERFST LGGVCLNVGC IPSKALLHVA 
KVIEEAKAVA AHGVVFGEPT IDLDKLRSFK QKVISQLTGG LGGMSKMRKV NVVNGFGKFT
GPNSLEVTAQ DGTVTVVKFD QAIIAAGSRP IKLPFIPHED PRIWDSTDAL ELKEVPGKLL
VMGGGIIGLE MGTVYSSLGS EIDVVEMFDQ VIPAADKDVV RVFTKQIKKK FNLILETKVT
AVEAREDGIY VSMEGKSAPA EPVRYDAVLV AIGRTPNGKL IDAEKAGVKI DERGFINVDK
QLRTNVPHIY AIGDIVGQPM LAHKGVHEGH VAAEVIAGMK HYFDPKVIPS IAYTDPEVAW
VGLTEKEAKE QGIAYETATF PWAASGRAIA SDCSEGMTKL IFDKDTHRVI GGAIVGVNGG
ELLGEIGLAI EMGCDAEDLA LTIHAHPTLH ESVGLAAEIY EGSITDLPNP KAKKK