Gene Shewmr4_0394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0394 
Symbol 
ID4251727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp441815 
End bp442714 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content51% 
IMG OID638116953 
Producttyrosine recombinase XerC 
Protein accessionYP_732531 
Protein GI113968738 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCGC AGTGTCAGTC CTATTTGCAG CAGTTTGAAA CCTATATGCA GTCTGAGCGC 
CAGTTATCGG CGCATACGGT TCGCAATTAT ATGTACGAAT TGCAGCGGGG AAGCGAGTTA
CTGCCAGAGG GCGTCGATCT GCTCAATGTG GGTCGTGAGC ATTGGCAACA GGTGCTTGCT
AAGCTGCATC GCAAGGGCTT GAGCCCGCGC TCGCTATCAT TGTGGTTGTC GGCCATCAAA
CAGTGGGGAG AATTTTTATT GCGCTCAGGC GTGATTGAAC TTAATCCTGC CAAGGGGCTG
AGTGCGCCCA AACAAGCCAA ACCGTTACCG AAGAATATCG ATGTCGATTC TATCTCGCAT
CTGCTCGCGA TTGAGGGCAA TGATCCGCTG ACCCTGCGTG ATAAAGCCAT TATGGAGCTG
TTTTACTCTA GTGGATTGCG CTTGGCTGAA CTGGCGGCGC TGGACTTATC CAGCGTGCAA
TACGACCAGC ATGAAGTGCG CGTGTTAGGC AAAGGCAACA AAGAGCGCAT CGTCCCCGTT
GGGCGTTACG CCATAGAGGC CATCAGTGCT TGGCTTAAGT GCCGCAAACA AATTTCCTGT
GAAGATAATG CATTGTTTGT CACGGAGAAG GGCAAGCGTT TGTCCCATCG CAGTATTCAG
GCGCGCATGA GCAAATGGGG TCAGGAGCAG GCGCTTTCTA TGCGGGTGCA TCCCCATAAG
TTACGCCATT CCTTTGCGAC GCACATGCTG GAATCCAGTG CCGATTTGCG GGCGGTGCAG
GAATTATTGG GTCACGAAAA CCTGTCGACC ACGCAAATTT ATACCAGTTT AGATTTCCAA
CACTTAGCTA AGGTGTATGA TAACGCCCAT CCTAGAGCGA AAAAACAACA GGATAAATAA
 
Protein sequence
MTPQCQSYLQ QFETYMQSER QLSAHTVRNY MYELQRGSEL LPEGVDLLNV GREHWQQVLA 
KLHRKGLSPR SLSLWLSAIK QWGEFLLRSG VIELNPAKGL SAPKQAKPLP KNIDVDSISH
LLAIEGNDPL TLRDKAIMEL FYSSGLRLAE LAALDLSSVQ YDQHEVRVLG KGNKERIVPV
GRYAIEAISA WLKCRKQISC EDNALFVTEK GKRLSHRSIQ ARMSKWGQEQ ALSMRVHPHK
LRHSFATHML ESSADLRAVQ ELLGHENLST TQIYTSLDFQ HLAKVYDNAH PRAKKQQDK