Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0377 |
Symbol | |
ID | 4251938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 403049 |
End bp | 405679 |
Gene Length | 2631 bp |
Protein Length | 876 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638116932 |
Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
Protein accession | YP_732514 |
Protein GI | 113968721 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0140415 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAGGG ATGAAGATGG AACTACCCCG CCTCGAGCTC ATGAGGTTGA ACGCTTAAAA AAGAGACTTA ATCGCCTCAA ATATTTGGCG CATAAGTATA AGCGTGCCGA AGTCGTTCAA AATGCGTTAC TCGAATTATC CCATATTGCG ACGCAGGTTC CTTCCCTCGA AGAGTTCTAT CTTGGTGTGC ATCACCACCT AAAGCAACTG ATCTCTGCCG ATAATTTTTT TATTGCCACT CTAGATGTGA ATAGCGGAGA CATTTCTGTC CCCTTCTTCG CCGATGAAAA AGACGCCCAC CCAGCCCAAC TCTATCCTGA ACAATCGCTC TCCACCCTGC TACAACAGGG ATTAACCGGT TATGTCTTTC GCTCGGGTGA AACCTTATTG TGCGATGAGA CTAAAGTCGA TGAATTGGTT CATGCTGGGG AGATACTGAA TCTCGGTTCG CCTTGTCACC TGTGGCTAGG CGTCCCCATT AAACATGAAG GCATAGTGAC CGCGGTACTC GTAGTACAGA CCTATGATAC CAATGTAAAT TACGGCGATA TCGAGGTCGA GTTAATGACC TTTATTTGCC ACCACATTGC CGGCGTGATG GAAAGGCTTA AACATCAAGA ACAACTAGAA CAAGCCATTC AGCAACGCAC CAAGGAACTC AGCCAAGCCT ACGATAAACT CAAGCAAGAA GTGTATGAGC GACGTAGAGC CGAGCGGTTG CAAAAGTCGT TATTTGAGAT TGCTGAGCTT GCTAGCTCAG GCTCTGATAA CCCCGACTTC TATGCCCAGC TACATAATGT TATCCGCCAT CTTATCCCCG CCAATAACTG TTATATCGCT CTGCTGAATG AAGAAGGCAC TCACTTAACC TTCCCGTTTT ACGTGTCGCA ATTAGGCAAC CAGCATCCAG GTTCAAGGCC CTTGCAGGAT GGGCTGACCG AGTATGTGCT CAAACACAAG CGACCATTAT TGCTCGACCG AAATGATCTC AATGATTTAA TCATCTCTGG CGAGCTTTAC GCTAAAGCCC CCGCACTAAA CCACACCCAA ACAATGCATC AATGGATAGG TATTCCACTG TTTATCCATG ACGAAGTGCG TGGCGCCTTG ACCATCTACA GTTTCAGCAT GACCCAAAAC TACCAAACTA AAGATTTGGA ATTGCTGACT TTTGTGTCCC AGCATATCGG TGCGGCCATC GAGAAAAAGC TAACGGCAGA ATCTTTGCGC CGCAGCTATG AAGAATTAGA AGAAAAAGTC GCGGCACGCA CCACGGCTCT TGCCGAGTTG AATAAGGATC TTGAAAAAGA AATCCGCCAA CGCCGCAATA TGGAAGCCAA GCTAGTGCAT GATGCCAAGC ACGATGCGCT CACAGGGCTG CCGAATCGCG CCATGTTTAT GGAGCGACTC AACCAAGCCA TAAAGCACGT GCGGCGCCAT AGCCTAGAGC AGTTTGCCCT GCTCTTTATC GACCTTGACC GCTTTAAGCA AATTAACGAC ACTATGGGGC ATTTAGAGGG GGATAGGTTC TTAATTGAAA CCGCTACCCG CCTACGCGCC TGTATTCGCA GTAACGATAC CTTAGCCAGA CTCGGTGGCG ATGAGTTTGT CATCCTGCTC GATAGCATTA ATGGTATTAA CGATGCCCGT GATGTTGCCG AGCGGGTGAT TCAAAAAATC TCACTATCCT ATACCTTAGG GGCAATCGAG TTTCATTCGG GCGCCAGTAT TGGCATCACC ATCAGTGGCA ATAAGCTAGA TACCAGTGAG TCTATGCTGC GCAATGCCGA CACCGCCATG TACCAAGCCA AGGCGAATGG CAAAGGCTGT TATGTCATCT TCGACGATAG CGCCTCTCAG CAAAAGATGC AGGACATTGC CTTCGAGAAT GATTTTAAAC AGGCATTACA AACCGGTGAG TTACAACTGC AATTTTGCCC GATTGTCGAT TTACAGACGC AGCAAACCCA AGCATTAGAA TGCCGTTTGA CTTGGGAACA TCCACAGTGG GGCACCATTC CACAGGAGAT CCTCAGCCAG TTAGCCGAAC AAGCGAACCT GATGGTCGAA CTGGATAAGT ATACGATTAG CTTGCTGGAT AAGAGCTATC ATCAACTACT TGCCAGCCAA GGGGATAAAG TTGAATTACA CCTTATGCTA TCGAGCCAAC ATCTAAAGCA TAAGCACGCG CTGCGTGGAC TCAAAAACGC CCTAAAGCAG ACTAAGCTTG CGCTGCCACA GCTATGGCTG TTTTTTAATG AAAAGGCGTT AGTGCTGGAA ACAGAGAATC ACATTAATGG CTTTGAGTTG TTGAAAAAGC TGGACGTGAA CTTGGGGATC AGCCACTACG GCAGTGGCCA CAGCTCATTA AATAGTTTGT TATTCTTACC CATCAAGGGC TTAAAGCTCG ATGCCAACAT CACCAAACAA TTGCAGGATG AGCAACACAT TAAGCTGATG TCGGCTTACC AGAAAGCGGC TTCGACCTTA GACTTACAAA CCTTTGTCGA TGGCCTGCAA TCCGCCGAGC AGATAAAAAT CTTCCACGCA TTAGGTTATC GCTTTGGCCA AGGCGGTGCC TTAGCCTCAC CTTTTTTATT GTCAGACACC ACACAACAGG TCTGTGCCTG A
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Protein sequence | MFRDEDGTTP PRAHEVERLK KRLNRLKYLA HKYKRAEVVQ NALLELSHIA TQVPSLEEFY LGVHHHLKQL ISADNFFIAT LDVNSGDISV PFFADEKDAH PAQLYPEQSL STLLQQGLTG YVFRSGETLL CDETKVDELV HAGEILNLGS PCHLWLGVPI KHEGIVTAVL VVQTYDTNVN YGDIEVELMT FICHHIAGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL QKSLFEIAEL ASSGSDNPDF YAQLHNVIRH LIPANNCYIA LLNEEGTHLT FPFYVSQLGN QHPGSRPLQD GLTEYVLKHK RPLLLDRNDL NDLIISGELY AKAPALNHTQ TMHQWIGIPL FIHDEVRGAL TIYSFSMTQN YQTKDLELLT FVSQHIGAAI EKKLTAESLR RSYEELEEKV AARTTALAEL NKDLEKEIRQ RRNMEAKLVH DAKHDALTGL PNRAMFMERL NQAIKHVRRH SLEQFALLFI DLDRFKQIND TMGHLEGDRF LIETATRLRA CIRSNDTLAR LGGDEFVILL DSINGINDAR DVAERVIQKI SLSYTLGAIE FHSGASIGIT ISGNKLDTSE SMLRNADTAM YQAKANGKGC YVIFDDSASQ QKMQDIAFEN DFKQALQTGE LQLQFCPIVD LQTQQTQALE CRLTWEHPQW GTIPQEILSQ LAEQANLMVE LDKYTISLLD KSYHQLLASQ GDKVELHLML SSQHLKHKHA LRGLKNALKQ TKLALPQLWL FFNEKALVLE TENHINGFEL LKKLDVNLGI SHYGSGHSSL NSLLFLPIKG LKLDANITKQ LQDEQHIKLM SAYQKAASTL DLQTFVDGLQ SAEQIKIFHA LGYRFGQGGA LASPFLLSDT TQQVCA
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