Gene Shewmr4_0308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0308 
Symbol 
ID4251922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp333593 
End bp334354 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content51% 
IMG OID638116863 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_732445 
Protein GI113968652 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTTAT TGAATAAAAC TGCCGTGGTG ACTGGGGCTG CCGGGGGCAT AGGGCAGGCC 
ATCATTCGTA AACTGCTCGA CGAAGGGGCT AGCGTCGTTG CCGCCGATCT GTCTGCCGAT
GCGCTGAAAG TATTTGATGA TTTTCCTGCC GACAAGCTGT CAATCTTTAG CGTAGATGTC
ACCGATTACA GCCAAGTTGA GGCTATGGTC AAGCATGCGG CCAAGCAGTT TGGCCAGCTC
GATATTCTGA TCAATAACGC GGGTATTGGT TTGGCTAAAC CGCTGTTACA GCATGATCCT
ATTAATGATT TTGAACCTGT CACCAATGTT AACCAAAGAG GTGTATATCA CGGCATCCTC
GCTGGTGGGC GCCAATTCCA AGCCCAAGGC ACTCGGGGTG TGATCCTCAA TACCTCTTCT
GTTTATGCGC AAATCGCCTC AGAAATGACC TTCACCTACA ACGTCAGTAA AGCGGCCGTC
GATATGATGA CCAAATGCGC CGCGCTTGAG TTTGCACCGC TTGGCGTGCG GGTCTGTGCC
GTGGCGCCGG GCCGTGTCGA TACACCTATG TTGCGTCAGT ATGAGGCGCT GGGACTGTGG
GAACACATTC GCAAAGAACA AATGCGCCAA GAATTTACCC AACCGAATGA GATTGCCGAT
GTGGTGGCGT TTCTCGTCAG TGATGAGGCC AATTGCATCA ATGGTTGCAC AGTGAACGCC
TCCGACGGTT TTGAAAACTT TAAATATCCA CTGCTGGGGT AG
 
Protein sequence
MRLLNKTAVV TGAAGGIGQA IIRKLLDEGA SVVAADLSAD ALKVFDDFPA DKLSIFSVDV 
TDYSQVEAMV KHAAKQFGQL DILINNAGIG LAKPLLQHDP INDFEPVTNV NQRGVYHGIL
AGGRQFQAQG TRGVILNTSS VYAQIASEMT FTYNVSKAAV DMMTKCAALE FAPLGVRVCA
VAPGRVDTPM LRQYEALGLW EHIRKEQMRQ EFTQPNEIAD VVAFLVSDEA NCINGCTVNA
SDGFENFKYP LLG