Gene Shewmr4_0304 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0304 
Symbol 
ID4251918 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp325211 
End bp327448 
Gene Length2238 bp 
Protein Length745 aa 
Translation table11 
GC content52% 
IMG OID638116859 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_732441 
Protein GI113968648 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0244305 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.816396 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAAGT CTATGGGGCC GATAAGCCTA GTCGCCGCCG CAGTTATCTG CCAACTGGGG 
CTTGTTAATG TGGCAACAGC CGCTGAAAAC GATATGGAGC GCATGGTGGT CTCCGCCACC
CGCTCACCGA CCCAAATCAG CGATCTCTCC AGCACTGTGT GGATCATTGA TGAAGCCAGC
ATTCGCGAGC AAACCGATAG CGGCAAAGGT ATTAAGGAAA TGCTCGCCGC CTTAGTGCCG
TCGATGGATG TGTCCAGCCA AGGGCGCACC AACTTTGGCC AAAATATTCG CGGTCGCGCC
ATGGTGGTCT TAATCGATGG CGTGTCGATG AACACCTCCC GCAGTATCAG CCGCCAGCTC
GACAGTATCG ATCCATTCAA TATTGCCCGC ATCGAAGTGC TCGCTGGCGC GTCGGCTATC
TATGGCGGTG GCGCACTGGG CGGTGCCATT AATATTGTCA CTAAAAAAGC GGCTGACAGC
AGTGATACCT TCGAAGCCGA AGCGGGATTC AAGTCCGGCT TTAATAGCAG TGATGATTTA
GATTACCGCA CCGCGCTGGC GGTGACCGGG GGCAGCGATT CGCTTAAAGG GCGCTTTAGT
GCCGCTTGGC AGGAAAACGG CCAATGGTTT GATGGCAGTA GCAACCCTGT GATGCTGGAC
ATTACCCAAA CCGGAATGCA GTACACCCAA GGTTATGATT TAATGGCGAA TATGGATTGG
CAGCTTGCCA ATGACGCCAA CCTCAGCGCC ATGGCGCAAT ACTATCGCAA CGGTTCAGAC
GATGAACATG GTCTGTATAT GGGTGAGAAC TTCTCAGGCG TCACTGGCGA TGCCTCAGTG
CTAGAAACCC GTAAGGGATT AGACGCTGAC CGCAGCCCCG CCACCGAGCG CACTTTGCTG
AATCTGTCCT ACTCCCAGAA TGAGTTTCTT GGTCAAACCC TGTATTTACA AGGCTTTTAT
CGCAAAGAGA ATCTGGATTT CCACCCGTTC CCCTATGTCA ATGAAACCAG CGGCGTCTAC
AACTTCTCAG CATCGGCCCA AAACACCAGT ATCTATGGTT TGAAGGCGGT CGTGGAATCC
AAGCCCGTCG ATAGCCTCAC TCTTACCTGG GGACTGGATT GGGATAAAGA AAGTTTTGAT
TCGAGCCAAA TGAGCTTCGA CCTCGATGCC GCCAACCAAC ACGGCGGCTT AGTGATGCGC
GAGCTGTTCA CTACCGGCCG TTATGTCGAC TTTTCGGTCG AATCCATTGC TGCATTTGTC
CAAAGCAGTT GGGAGATGAA TAGCTTTTTG GTGCTAAACG CAGGCTATCG TTATCAACAC
ATGGAAAACA GCGTTGATGA TTTTATCGGT TATAACCAAC AGGTGACGAT CGCCTCTGGC
AAAGCCAAGG GAGCCGATGC CATTAAAGGC GGCAGCACCG ACTATAACAT AGGTTTAGTC
AACCTCGGCT TGGTGGCTAA GTTAAGCCAA GACCAACAAC TCTGGCTTGC CTATTCCCAA
GGCTTTGAGC TGCCAGACCT GTCGAAATAC TACGGCCGCG GCACCTACAA GGCCGATGCC
GACGGTTACT TACAGCTGCA AAACAGCATC AATATCAATG ATACCCGCCT TGACGGGATC
AAGACCGACT CCATGGAACT GGGATGGCGT TACCTTGCAG ACCGTTGGCA GGCGCAAGCC
AGCATCTACT ATGCCGTGTC TGACAAGGTG ATTGAGGTGA ACAGCAAAGA TCTGACCATC
GATGTCAAAG ACCAAGATAA GCGCAGCTAT GGCCTAGAGG CACAACTGAA CTTTGATATC
AGCTCCGACT GGCAAGTCGG CACCAACCTG CATCTGGTGC GCAGTGAAGT GAAAGATGAG
AATAATTGGA TTGATGAAAC CGTCACTTAT GCTTCGCCCT CTAAGGCGAC CGCCTTTATT
GGCTGGCGAG GCGAGACACA GAAGATCCGT TTACAAGCTG AGCACAGTTT TAGCGCCGAA
TCTGACTATC GCTTCAAAAC CAACGATGGC CTAGCGAGTG AGCTTGATAG CTACACGACG
CTGGATTTAC TGGGCTCTAT CGATTTACCG GTCGGCACCT TGAGCTACGG CATCGAAAAC
CTGCTCGATA AAGACTACAG CACCCTGTGG GGCCAAAGAG CGGTGTACTT CTACAGCCCG
ACCTACGGTC CTGAGTCAAT GTTCGACTAC CATGGCCGCG GTCGCACCTT TGCCCTCAAT
TATCAACTGA GTTGGTGA
 
Protein sequence
MPKSMGPISL VAAAVICQLG LVNVATAAEN DMERMVVSAT RSPTQISDLS STVWIIDEAS 
IREQTDSGKG IKEMLAALVP SMDVSSQGRT NFGQNIRGRA MVVLIDGVSM NTSRSISRQL
DSIDPFNIAR IEVLAGASAI YGGGALGGAI NIVTKKAADS SDTFEAEAGF KSGFNSSDDL
DYRTALAVTG GSDSLKGRFS AAWQENGQWF DGSSNPVMLD ITQTGMQYTQ GYDLMANMDW
QLANDANLSA MAQYYRNGSD DEHGLYMGEN FSGVTGDASV LETRKGLDAD RSPATERTLL
NLSYSQNEFL GQTLYLQGFY RKENLDFHPF PYVNETSGVY NFSASAQNTS IYGLKAVVES
KPVDSLTLTW GLDWDKESFD SSQMSFDLDA ANQHGGLVMR ELFTTGRYVD FSVESIAAFV
QSSWEMNSFL VLNAGYRYQH MENSVDDFIG YNQQVTIASG KAKGADAIKG GSTDYNIGLV
NLGLVAKLSQ DQQLWLAYSQ GFELPDLSKY YGRGTYKADA DGYLQLQNSI NINDTRLDGI
KTDSMELGWR YLADRWQAQA SIYYAVSDKV IEVNSKDLTI DVKDQDKRSY GLEAQLNFDI
SSDWQVGTNL HLVRSEVKDE NNWIDETVTY ASPSKATAFI GWRGETQKIR LQAEHSFSAE
SDYRFKTNDG LASELDSYTT LDLLGSIDLP VGTLSYGIEN LLDKDYSTLW GQRAVYFYSP
TYGPESMFDY HGRGRTFALN YQLSW