Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0304 |
Symbol | |
ID | 4251918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 325211 |
End bp | 327448 |
Gene Length | 2238 bp |
Protein Length | 745 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638116859 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_732441 |
Protein GI | 113968648 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0244305 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.816396 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAAGT CTATGGGGCC GATAAGCCTA GTCGCCGCCG CAGTTATCTG CCAACTGGGG CTTGTTAATG TGGCAACAGC CGCTGAAAAC GATATGGAGC GCATGGTGGT CTCCGCCACC CGCTCACCGA CCCAAATCAG CGATCTCTCC AGCACTGTGT GGATCATTGA TGAAGCCAGC ATTCGCGAGC AAACCGATAG CGGCAAAGGT ATTAAGGAAA TGCTCGCCGC CTTAGTGCCG TCGATGGATG TGTCCAGCCA AGGGCGCACC AACTTTGGCC AAAATATTCG CGGTCGCGCC ATGGTGGTCT TAATCGATGG CGTGTCGATG AACACCTCCC GCAGTATCAG CCGCCAGCTC GACAGTATCG ATCCATTCAA TATTGCCCGC ATCGAAGTGC TCGCTGGCGC GTCGGCTATC TATGGCGGTG GCGCACTGGG CGGTGCCATT AATATTGTCA CTAAAAAAGC GGCTGACAGC AGTGATACCT TCGAAGCCGA AGCGGGATTC AAGTCCGGCT TTAATAGCAG TGATGATTTA GATTACCGCA CCGCGCTGGC GGTGACCGGG GGCAGCGATT CGCTTAAAGG GCGCTTTAGT GCCGCTTGGC AGGAAAACGG CCAATGGTTT GATGGCAGTA GCAACCCTGT GATGCTGGAC ATTACCCAAA CCGGAATGCA GTACACCCAA GGTTATGATT TAATGGCGAA TATGGATTGG CAGCTTGCCA ATGACGCCAA CCTCAGCGCC ATGGCGCAAT ACTATCGCAA CGGTTCAGAC GATGAACATG GTCTGTATAT GGGTGAGAAC TTCTCAGGCG TCACTGGCGA TGCCTCAGTG CTAGAAACCC GTAAGGGATT AGACGCTGAC CGCAGCCCCG CCACCGAGCG CACTTTGCTG AATCTGTCCT ACTCCCAGAA TGAGTTTCTT GGTCAAACCC TGTATTTACA AGGCTTTTAT CGCAAAGAGA ATCTGGATTT CCACCCGTTC CCCTATGTCA ATGAAACCAG CGGCGTCTAC AACTTCTCAG CATCGGCCCA AAACACCAGT ATCTATGGTT TGAAGGCGGT CGTGGAATCC AAGCCCGTCG ATAGCCTCAC TCTTACCTGG GGACTGGATT GGGATAAAGA AAGTTTTGAT TCGAGCCAAA TGAGCTTCGA CCTCGATGCC GCCAACCAAC ACGGCGGCTT AGTGATGCGC GAGCTGTTCA CTACCGGCCG TTATGTCGAC TTTTCGGTCG AATCCATTGC TGCATTTGTC CAAAGCAGTT GGGAGATGAA TAGCTTTTTG GTGCTAAACG CAGGCTATCG TTATCAACAC ATGGAAAACA GCGTTGATGA TTTTATCGGT TATAACCAAC AGGTGACGAT CGCCTCTGGC AAAGCCAAGG GAGCCGATGC CATTAAAGGC GGCAGCACCG ACTATAACAT AGGTTTAGTC AACCTCGGCT TGGTGGCTAA GTTAAGCCAA GACCAACAAC TCTGGCTTGC CTATTCCCAA GGCTTTGAGC TGCCAGACCT GTCGAAATAC TACGGCCGCG GCACCTACAA GGCCGATGCC GACGGTTACT TACAGCTGCA AAACAGCATC AATATCAATG ATACCCGCCT TGACGGGATC AAGACCGACT CCATGGAACT GGGATGGCGT TACCTTGCAG ACCGTTGGCA GGCGCAAGCC AGCATCTACT ATGCCGTGTC TGACAAGGTG ATTGAGGTGA ACAGCAAAGA TCTGACCATC GATGTCAAAG ACCAAGATAA GCGCAGCTAT GGCCTAGAGG CACAACTGAA CTTTGATATC AGCTCCGACT GGCAAGTCGG CACCAACCTG CATCTGGTGC GCAGTGAAGT GAAAGATGAG AATAATTGGA TTGATGAAAC CGTCACTTAT GCTTCGCCCT CTAAGGCGAC CGCCTTTATT GGCTGGCGAG GCGAGACACA GAAGATCCGT TTACAAGCTG AGCACAGTTT TAGCGCCGAA TCTGACTATC GCTTCAAAAC CAACGATGGC CTAGCGAGTG AGCTTGATAG CTACACGACG CTGGATTTAC TGGGCTCTAT CGATTTACCG GTCGGCACCT TGAGCTACGG CATCGAAAAC CTGCTCGATA AAGACTACAG CACCCTGTGG GGCCAAAGAG CGGTGTACTT CTACAGCCCG ACCTACGGTC CTGAGTCAAT GTTCGACTAC CATGGCCGCG GTCGCACCTT TGCCCTCAAT TATCAACTGA GTTGGTGA
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Protein sequence | MPKSMGPISL VAAAVICQLG LVNVATAAEN DMERMVVSAT RSPTQISDLS STVWIIDEAS IREQTDSGKG IKEMLAALVP SMDVSSQGRT NFGQNIRGRA MVVLIDGVSM NTSRSISRQL DSIDPFNIAR IEVLAGASAI YGGGALGGAI NIVTKKAADS SDTFEAEAGF KSGFNSSDDL DYRTALAVTG GSDSLKGRFS AAWQENGQWF DGSSNPVMLD ITQTGMQYTQ GYDLMANMDW QLANDANLSA MAQYYRNGSD DEHGLYMGEN FSGVTGDASV LETRKGLDAD RSPATERTLL NLSYSQNEFL GQTLYLQGFY RKENLDFHPF PYVNETSGVY NFSASAQNTS IYGLKAVVES KPVDSLTLTW GLDWDKESFD SSQMSFDLDA ANQHGGLVMR ELFTTGRYVD FSVESIAAFV QSSWEMNSFL VLNAGYRYQH MENSVDDFIG YNQQVTIASG KAKGADAIKG GSTDYNIGLV NLGLVAKLSQ DQQLWLAYSQ GFELPDLSKY YGRGTYKADA DGYLQLQNSI NINDTRLDGI KTDSMELGWR YLADRWQAQA SIYYAVSDKV IEVNSKDLTI DVKDQDKRSY GLEAQLNFDI SSDWQVGTNL HLVRSEVKDE NNWIDETVTY ASPSKATAFI GWRGETQKIR LQAEHSFSAE SDYRFKTNDG LASELDSYTT LDLLGSIDLP VGTLSYGIEN LLDKDYSTLW GQRAVYFYSP TYGPESMFDY HGRGRTFALN YQLSW
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