Gene Shewmr4_0253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0253 
Symbol 
ID4250817 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp272561 
End bp273052 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content49% 
IMG OID638116809 
Productprotein of unknown function, Spy-related 
Protein accessionYP_732391 
Protein GI113968598 
COG category[N] Cell motility
[T] Signal transduction mechanisms
[P] Inorganic ion transport and metabolism
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3678] P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.05349e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000372635 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGAAAA CACTATCTCC TTTAAAAGCA GGTCTATTTG CCATCTTAGC AAGCTCCGCT 
GTATTTGCGA CAACAGTCAG TGCAGAGCCC GGCCAAGGCT GCGATCATCC ACGCGGTGAG
TTCCATAAAC ATGGTGACCG TATGGGCCAT GACGGTATGC ACAGAATGTT CGAAGGTTTA
GATTTAACCG ATGCACAAAA GGCCGACATT AAGAAACTGT TTGCAGAGCA CCGCGCCGCA
CGCAGCGATG ACAGACCGAC TAAGGAAGAG CGTTTAGCAC ACCGTACCGA AATGCATGCG
CTGATCACTG CGGCCAACTT CGATGAGGCG CAAGCTAAGG CATTAATGAG TGCCCAGCAG
GAAAAACGCC AAGCTCAAGC GATTGAACGG ATGAAGATGC AGAATCAGAT CTACAACCTG
CTCACGCCTG AGCAACAAGC AAAATTTAAA GCGCGATTTG AAGCACAAGC TGGTAAAGAA
CCTCGCGGTT AA
 
Protein sequence
MMKTLSPLKA GLFAILASSA VFATTVSAEP GQGCDHPRGE FHKHGDRMGH DGMHRMFEGL 
DLTDAQKADI KKLFAEHRAA RSDDRPTKEE RLAHRTEMHA LITAANFDEA QAKALMSAQQ
EKRQAQAIER MKMQNQIYNL LTPEQQAKFK ARFEAQAGKE PRG