Gene Shewmr4_0252 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0252 
Symbol 
ID4250816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp271528 
End bp272214 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content49% 
IMG OID638116808 
Producttwo component transcriptional regulator 
Protein accessionYP_732390 
Protein GI113968597 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000571082 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000346333 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTCGGA TATTATTAAT CGATGATGAT CTTGGTTTAT CAGAACTTCT CGGACAATTA 
CTCGAACTCG AAGGGTTTAA ACTCACGCTG GCCTACGATG GTAAGCAAGG CCTTGAGCTG
GCCCTTGCGG GGGATTACGA TCTGATCTTG CTCGACGTGA TGCTGCCTAA GTTAAACGGC
TTTGAAGTGC TACGCGCACT GCGTCAACAC AAACAAACCC CTGTGCTGAT GCTGACCGCC
AGAGGGGATG AAATTGACCG TGTGGTTGGC CTTGAAATCG GTGCCGATGA CTATTTGCCT
AAACCCTTTA ACGACAGGGA GCTTATCGCC CGCATTCGCG CCATTATTCG CCGCTCACAC
TTAACCGCCC AAGAAATCCA TGCCACTCCG GCGCAGGAAT TTGGCGATTT ACGCTTAGAT
CCCTCACGCC AAGAGGCCTA CTGTAATGAG CAGCTTATTA TCCTCACAGG GACTGAGTTT
ACCTTGCTGC ACACACTAGC ACTGCATGCG GGTGAGCTGA TGAATAAAGA AGAGCTCAAT
GAAATTGTGC TCGGCAAAAA ACTCATGCCC TTCGATCGCA GCCTAGATAT GCACCTCTCG
AATCTACGCA AAAAACTCCC AGAACGCAGC GATGGCAGAC CTAGGGTGAA AACTATCCGT
GGCAAAGGCT ATATCTGGTT ACCATAA
 
Protein sequence
MSRILLIDDD LGLSELLGQL LELEGFKLTL AYDGKQGLEL ALAGDYDLIL LDVMLPKLNG 
FEVLRALRQH KQTPVLMLTA RGDEIDRVVG LEIGADDYLP KPFNDRELIA RIRAIIRRSH
LTAQEIHATP AQEFGDLRLD PSRQEAYCNE QLIILTGTEF TLLHTLALHA GELMNKEELN
EIVLGKKLMP FDRSLDMHLS NLRKKLPERS DGRPRVKTIR GKGYIWLP