Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0252 |
Symbol | |
ID | 4250816 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 271528 |
End bp | 272214 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638116808 |
Product | two component transcriptional regulator |
Protein accession | YP_732390 |
Protein GI | 113968597 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000571082 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.000346333 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGTCGGA TATTATTAAT CGATGATGAT CTTGGTTTAT CAGAACTTCT CGGACAATTA CTCGAACTCG AAGGGTTTAA ACTCACGCTG GCCTACGATG GTAAGCAAGG CCTTGAGCTG GCCCTTGCGG GGGATTACGA TCTGATCTTG CTCGACGTGA TGCTGCCTAA GTTAAACGGC TTTGAAGTGC TACGCGCACT GCGTCAACAC AAACAAACCC CTGTGCTGAT GCTGACCGCC AGAGGGGATG AAATTGACCG TGTGGTTGGC CTTGAAATCG GTGCCGATGA CTATTTGCCT AAACCCTTTA ACGACAGGGA GCTTATCGCC CGCATTCGCG CCATTATTCG CCGCTCACAC TTAACCGCCC AAGAAATCCA TGCCACTCCG GCGCAGGAAT TTGGCGATTT ACGCTTAGAT CCCTCACGCC AAGAGGCCTA CTGTAATGAG CAGCTTATTA TCCTCACAGG GACTGAGTTT ACCTTGCTGC ACACACTAGC ACTGCATGCG GGTGAGCTGA TGAATAAAGA AGAGCTCAAT GAAATTGTGC TCGGCAAAAA ACTCATGCCC TTCGATCGCA GCCTAGATAT GCACCTCTCG AATCTACGCA AAAAACTCCC AGAACGCAGC GATGGCAGAC CTAGGGTGAA AACTATCCGT GGCAAAGGCT ATATCTGGTT ACCATAA
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Protein sequence | MSRILLIDDD LGLSELLGQL LELEGFKLTL AYDGKQGLEL ALAGDYDLIL LDVMLPKLNG FEVLRALRQH KQTPVLMLTA RGDEIDRVVG LEIGADDYLP KPFNDRELIA RIRAIIRRSH LTAQEIHATP AQEFGDLRLD PSRQEAYCNE QLIILTGTEF TLLHTLALHA GELMNKEELN EIVLGKKLMP FDRSLDMHLS NLRKKLPERS DGRPRVKTIR GKGYIWLP
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