| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0233 |
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| Symbol | |
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| ID | 4251007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 247689 |
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| End bp | 248936 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638116785 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_732371 |
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| Protein GI | 113968578 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00046465 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000455272 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACGACAT TTTGGATTTT TATTGCGCTT GTTGTGTTGG TCAGCTTAAT GCTGATCTGG
ATCCCGCATT TCAGACAGCA AAAGTTGTTA CGCACTGAAG AAGCCGGCGT TCGCAAACAA
ACTAACCTTG AGTTGTTCAA TGAACGTCTT GCCACTCTCG AGAAAGAGCT TAATGAAGAA
CTACTCGACC AAGCAGAGTT TGATGCTCTA AAGAAAGAGT TAGAAATCAG CCTGCTCCAA
GATATCAAAC AAGCGAGCGA TGATTCACTC GTCAATCAAA TCAAACCTAA GAGCATTCTG
TGGCCATCAA TCATGTCAGT TTGCTTGATT GCGATCTCAG GTTACCTCTA TCAGCATTTA
GGCGCTTTTG AGAATATTGG TAATACTCAA CCTGCTAACC CACATGCGGG TATGGACGCA
GCGCAAATCA TGGCGCAACG CGTACAAATG ATGGAAGCCC AAGTACAAGC CGAGCCTGAA
AACAGCCAAG CTTGGTTCAG CCTTGGACAT GCTTATATTT CGGCAAACCA ATTCGATAAA
GCCGTTGCCG CGTTCGATAA AGTCATGGAT TTAGTCGGTA AGCATGCAGA GCTACTTGGC
CCTAAAGCAA CTGCACTGTA CTACAAAAAC GGTCAGCAAA TGACACCGCA AATCCAAGCC
TTAATTGATG AATCCTTAGC ATTAGATCCA CTGGATCCAT CGACATTACT GCTCGTGGGT
ATGGATGCTT TCTTCACGGC TAACTATCAA AAGGCCATTG ATTCATGGCA AGCCATTCTA
AGCAGCGACC GCACCGATGT TGACCGCGCC GCACTGATGA ATGCGATTGA AACAGCCAAC
CTGCGTATGC AAGGCGAAAC TGCTGGCATG CCTAACGATG ACGTACACAA ACAGGCAAAA
GTTGCGACGA AATCCGTAAG CATCGAAATT TCAATTTCAC CTGAGCTAGC AGCACAAGCA
AGCCCAGAAG ACACTATCTT TGTATTCGCC CGCGCAACTG AAGGCCCTAA AGTGCCATTA
GCTGCGACTA AGGTCAGCGC AAAATCCTTA CCAATAACAG TCACCTTAGA TGACAGCACT
GGCATGGGTG GCGACGTGAA ACTAAGCCAA ACTGCGAGCG TTGAAGTGAT CGCGGTGTTG
TCTAAGCATG GCAATATCAA GCCTCAAGCG GGTGACATTC AAGGCAAGGT TAGCAAAGTG
AATGTGGGTG AAACCGCAAA CTTAGTACTA GATACTCAGG TGCAATAA
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| Protein sequence | MTTFWIFIAL VVLVSLMLIW IPHFRQQKLL RTEEAGVRKQ TNLELFNERL ATLEKELNEE
LLDQAEFDAL KKELEISLLQ DIKQASDDSL VNQIKPKSIL WPSIMSVCLI AISGYLYQHL
GAFENIGNTQ PANPHAGMDA AQIMAQRVQM MEAQVQAEPE NSQAWFSLGH AYISANQFDK
AVAAFDKVMD LVGKHAELLG PKATALYYKN GQQMTPQIQA LIDESLALDP LDPSTLLLVG
MDAFFTANYQ KAIDSWQAIL SSDRTDVDRA ALMNAIETAN LRMQGETAGM PNDDVHKQAK
VATKSVSIEI SISPELAAQA SPEDTIFVFA RATEGPKVPL AATKVSAKSL PITVTLDDST
GMGGDVKLSQ TASVEVIAVL SKHGNIKPQA GDIQGKVSKV NVGETANLVL DTQVQ
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