Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0224 |
Symbol | |
ID | 4250682 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 241589 |
End bp | 242578 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638116776 |
Product | DNA-directed RNA polymerase subunit alpha |
Protein accession | YP_732362 |
Protein GI | 113968569 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00010279 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000313535 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TTGATATCGA GCAGGTTAAC TCAACACGTG CCAAGGTTAC TTTGGAACCG CTTGAGCGTG GTTTCGGCCA CACTTTAGGT AACGCGTTGC GTCGCATCCT ATTGTCGTCT ATGCCCGGCT GCGCGGTTAC CGAAGTCGAG ATTGACGGCG TGCTGCACGA ATACAGCAGT AAGGAAGGCG TACAAGAAGA TATCCTTGAA ATCTTGCTGA ACCTGAAAGG GTTAGCAGTG ACTATCGAGG GTAAAGACGA GGCTATGCTT ACATTAAGCA AGTCCGGCGC AGGCCCTGTC ATCGCAGCAG ATATCACGCA TGATGGTGAT GTCACTATCG TGAATCCTGA TCATGTTATC TGTCATTTAA CAGGTAACAA TGATATCAGC ATGCGTATTC GCGTTGAGCG TGGTCGTGGT TATGTGCCAG CATCTGCTCG TGCACAGACT GAAGACGATG ACCGCCCAAT CGGCCGCTTG CTGGTTGATG CTTCTTTCTC GCCAGTTGCA CGTATTGCCT ACAATGTAGA AGCAGCACGT GTGGAACAGC GTACTGACTT GGATAAACTC GTTATCGATA TGACCACTAA CGGTACTATC GATCCTGAGG AAGCTATCCG TCGTTCTGCA ACCATCTTAG CTGAACAGCT GGATGCGTTC GTTGAGCTGC GCGACGTGAC TGAGCCAGAA ATGAAAGAAG AGAAGCCGGA GTTCGATCCG ATTCTGTTGC GTCCTGTCGA CGATTTAGAG CTAACTGTAC GTTCGGCTAA CTGCTTGAAA GCCGAAGCGA TTCATTACAT CGGAGATCTG GTACAGCGTA CTGAAGTTGA GCTGCTGAAG ACCCCTAACT TAGGTAAGAA ATCTCTTACT GAAATTAAGG ACGTTTTAGC TTCTCGCGGA CTGTCGTTAG GTATGCGTCT GGAAAACTGG CCTCCAGCTA GTTTAGCAGA CGACCTATAA
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Protein sequence | MQGSVTEFLK PRLVDIEQVN STRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE IDGVLHEYSS KEGVQEDILE ILLNLKGLAV TIEGKDEAML TLSKSGAGPV IAADITHDGD VTIVNPDHVI CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDASFSPVA RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEPE MKEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT EIKDVLASRG LSLGMRLENW PPASLADDL
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