Gene Shewmr4_0178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0178 
Symbol 
ID4250723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand- 
Start bp198779 
End bp199876 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content46% 
IMG OID638116721 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_732316 
Protein GI113968523 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00246354 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTAG CAGCAATGGA TCCCACGACC TATGATGCGC AATTAACTGC AAAGCGTATC 
AAGCTAGAGC AGGCCTTTGC CCAATTTGAG ACACCGAGTG TTGAAGTGTT TGCCTCAGAA 
CCTGCCCACT ATCGGATGCG CGCCGAGTTT CGCATATGGC ACGAGGGCGA CGATTTATAC 
TATTACATGT TCGATAAAGT ATTGAACGAC AAAGTTCGTT GCGATCAATA CTTACCCGCG 
AGTGCCTTAA TCAATCAGAT GATGGCGGCT CTGATCGCCG AGTTAAAACC GAACCACAGC 
CTACGCCATA AACTCTTCCA GGTTGATTTT TTATCAACGC TCAGTGGTGA GATTTTAGTG 
TCACTGTTGT ATCACAGACA GCTTGATGAT CAATGGCGCA GCGAAGCCGC CGCACTTAAA 
GCCAGATTGA GCAGCCAATT TAAGGTCAAT ATCATTGGTC GTGCGCGCAA ACAGAAAATC 
GATTTAGATA AAGACTTTGT GGTTGAGTCA CTGCAAGTGA ATGACAAAGT TTTCCATTAC 
AAACAAATCG AAAACAGCTT TACCCAGCCA AATGCCAAGG TAGCAATCAA GATGCTGGAA 
TGGGCTATCG ACGTGACTCA ACACAGCCAA GGCGATTTAC TGGAGCTTTA CTGTGGTAAT 
GGCAACTTCT CCATCGCGCT GGCACAAAAC TTTAATCGCG TGCTCGCAAC CGAGTTGGCT 
AAACCCTCAG TGGATGCTGC TCAGTACAAT ATCGAAGTCA ACAATATCGA TAATCTGCAG 
ATTATCCGTA TGTCGGCGGA AGAATTTAGC GATGCGATGG CTAAAAAGCG CAGCTTTAGA 
CGCTTAGAAG GCATAGATCT GGATAGCTAT GTCTGCAACA CCATTTTTGT CGACCCACCA 
CGAGCAGGTA TCGACCCTGC GACGTTGGAG TTAGTGCAAG GTTATGAGCG GATCCTGTAT 
ATCTCTTGTA ATCCCGACAC CTTGAAAGAC AATTTGCAGC AATTAAATCA GACCCATAAA 
GTCACCCGTT TTGCCCTGTT CGATCAGTTC CCTTATACCG ATCATATGGA AACAGGTGTA 
CTGCTTGAGC GTCGTTAA
 
Protein sequence
MNLAAMDPTT YDAQLTAKRI KLEQAFAQFE TPSVEVFASE PAHYRMRAEF RIWHEGDDLY 
YYMFDKVLND KVRCDQYLPA SALINQMMAA LIAELKPNHS LRHKLFQVDF LSTLSGEILV 
SLLYHRQLDD QWRSEAAALK ARLSSQFKVN IIGRARKQKI DLDKDFVVES LQVNDKVFHY 
KQIENSFTQP NAKVAIKMLE WAIDVTQHSQ GDLLELYCGN GNFSIALAQN FNRVLATELA 
KPSVDAAQYN IEVNNIDNLQ IIRMSAEEFS DAMAKKRSFR RLEGIDLDSY VCNTIFVDPP 
RAGIDPATLE LVQGYERILY ISCNPDTLKD NLQQLNQTHK VTRFALFDQF PYTDHMETGV 
LLERR