| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0157 |
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| Symbol | |
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| ID | 4250879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 179790 |
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| End bp | 181355 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638116700 |
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| Product | type II secretion system protein E (GspE) |
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| Protein accession | YP_732295 |
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| Protein GI | 113968502 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA TACAAGTAAC CCAAGTCGAG GATTTAAGCC TAGTTTCTAA CGAACTAGGG
CTTGAAGCCG AAGGTGATGA GGTATTTCGC TCCAGCAGCA AAGAGCGTTT ACCCTTTGCC
TTTGCCCACC GCCATGAGGT GATTTTAGCC TTTGGCGAGG ATGGTGCCTT GAGCCTGTTT
TATACCGCCA AAACCCCGTT AACGGCCATG CTCGAAGCGC GCCGTTACTC GGGTGTGGAT
TTGCCGCTGG TATTGCTCGA ACCGGGCAAG TTTGAGGCGA AATTAACTCA GGCCTATCAA
GCCAACTCCT CCGAAGCGCA GCAGCTGATG GAAGATATTG GCAACGAGAT GGATTTATTC
ACCCTCGCCG AAGAGCTGCC GCAGACCGAA GATCTGCTCG AAGGCGATGA TGATGCGCCT
ATTATCAAGC TGATTAACGC CTTGTTATCT GAAGCGATTA AAGAAGAAGC CTCGGATATC
CATATCGAAA CCTACGAGAA GCAGTTGGTC GTGCGTTTCC GTATCGACGG TGTGCTGAAG
GAAGTGCTTA AGCCGAATCG TAAGTTGTCA TCCTTGTTGG TGTCGCGGAT CAAGGTGATG
GCGCGTCTCG ATATCGCCGA GAAACGTGTG CCACAAGACG GCCGTATTTC GCTGCGGATT
GCGGGTCGTG CGGTGGATGT GCGGGTATCG ACCATGCCAT CGAGCCATGG CGAGCGTGTG
GTGCTGCGTC TGTTAGATAA AAACGCCGGT AATCTGGATT TAAAACAATT GGGTATGACC
GACAGTATCC GTGCCAAGTT CGACGAGCTT ATTCGTCGTC CCCACGGCAT TATTCTGGTC
ACAGGCCCTA CGGGTTCCGG TAAGAGTACT ACGCTGTACG CCGGGCTTAC CGAAATTAAC
TCCAAAGATA CCAACATCTT AACCGTTGAA GATCCGATCG AATACGAGTT AGAAGGCATA
GGTCAAACCC AAGTGAACAC TAAGGCTGAC ATGACCTTCG CCCGTGGTCT GCGTGCGATT
CTGCGTCAGG ACCCGGATGT GGTGATGATC GGCGAAATCC GTGACCTAGA AACCGCCCAA
ATTGCGGTGC AGGCATCCTT GACCGGTCAC TTAGTGATTT CAACCCTGCA TACCAACACG
GCTTCTGGTG CAATTACCCG TTTGCAAGAC ATGGGCGTAG AGCCATTCCT AGTCTCATCG
AGTTTGCTTG GGGTATTAGC CCAGCGTTTA ATTCGTACTC TCTGTCCAAA ATGTAAGACA
GAGCATGTGC CCGATGCCCG TGAGCGTGAG CTGCTGGGAA TGGCGGCAGA CGATCATCGT
CATATTTATC GCGCCAATGG CTGTAAGGCC TGTGGTAGCA GTGGCTACCG TGGTCGTACG
GGTATCCATG AGCTATTGCT GGTCGATGAT AATGTGCGCG AGCTGATCCA CGGTGGACGT
GGCGAACTGG CGATTGAGAA ATATATCCGC CAGTCGGTGC CAAGCATTCG CCACGATGGC
ATGAGCAAGG TGCTCTCAGG TATCACCACT CTGGAAGAAG TCCTGAGGGT GACCCGCGAG
GAGTAA
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| Protein sequence | MSEIQVTQVE DLSLVSNELG LEAEGDEVFR SSSKERLPFA FAHRHEVILA FGEDGALSLF
YTAKTPLTAM LEARRYSGVD LPLVLLEPGK FEAKLTQAYQ ANSSEAQQLM EDIGNEMDLF
TLAEELPQTE DLLEGDDDAP IIKLINALLS EAIKEEASDI HIETYEKQLV VRFRIDGVLK
EVLKPNRKLS SLLVSRIKVM ARLDIAEKRV PQDGRISLRI AGRAVDVRVS TMPSSHGERV
VLRLLDKNAG NLDLKQLGMT DSIRAKFDEL IRRPHGIILV TGPTGSGKST TLYAGLTEIN
SKDTNILTVE DPIEYELEGI GQTQVNTKAD MTFARGLRAI LRQDPDVVMI GEIRDLETAQ
IAVQASLTGH LVISTLHTNT ASGAITRLQD MGVEPFLVSS SLLGVLAQRL IRTLCPKCKT
EHVPDARERE LLGMAADDHR HIYRANGCKA CGSSGYRGRT GIHELLLVDD NVRELIHGGR
GELAIEKYIR QSVPSIRHDG MSKVLSGITT LEEVLRVTRE E
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